OR52H2P Olfactory Receptor
| Gene Symbol | OR52H2P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | H |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.3.71P, ORL3614 |
| External Ids | HGNC: 15219 GeneBank: NG_004222 ORDB: ORL3614 |
| Build #39 labels | OR52H2P |
| Chromosomal location | 11:5,551,665-5,552,596 (-) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52H1 | 76.85% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52H2 | 84% | 310 |
| Dog | OR52H1C | 81% | 313 |
| Mouse | Or52h2 | 87% | 310 |
| Rat | Or52h2 | 85% | 310 |
| Cow | OR52H2 | 85% | 306 |
| Orang | OR52H1 | 78% | 307 |
| Horse | OR52H2 | 85% | 313 |
| Chimp | OR52H1 | 78% | 311 |
Sequence information
| Nucleotide sequence |
ATGTACAACATGAGTGACCATGGTACAGGCCTGTTCATCCTTTTGGGTATCCCTGGACTT GAGCAGTACCACGTCTGGATCAGCATCCCATTCTGCTTAATCTATCTCATGGCTGTCGTG GCCAATAGTATCCTTCTCTACCTCATTGTGGTAGAGCACAGTCTTCATGCACCCATGTTC TTTTTCCTTTCCATGCTGGCCATTACTGATCTCATATTGTCCACCACATGTGTCCCCAAA ACACTTAGCATCTTCTGGTTTGGTCCCCAAACAGTTTCCCTGGCTGTCTCACCCAATTAT TCTTTCTGCACTATAGCTTTGTGTTGGACTCAGCTATACTGCTGGCCATGGCATTTGACC GCTATATGGCCATTTGCTCACCCTTGAGATACACTACTATTCTGACTCCCAAAACCATTG TCAAAATTGCTGTGGGAATATGTTTCCGAAGTTTCTGTGTTTTTGTCCCATGTGTTTTCC TTGTGAATCGTTTACCCTTCTGCAGGACACATATCATTTCTCACACATACTGTGAGCACA TAGGTGTTGCCCAGCTTGCCTGTGCTGATATCTCCATCAATATCTGGTGTGGATTTTGTG TTCCCATCATGACGGTGATGACAGACGTGATCCTCATTGCTGTCTCCTACACCCTCATCC TCTGTGCTGTCTTTTGCCTCCCCTCCCAAGATGCCCGTCAGAAGGCCCTTTGCTCCTGTG GTTCCCATGTCTGTGTTATCCTCATATTCTATATACCAGCATTCTTCTCCATTCTTGCCC ATTGCTTTGGGCATAATGTCCCTCATACCTTTCATATTATGTTTGCCAACCTTTATGTAA TCATTCCACCTGCTCTCAACTCTATTGTCTACAGAATAAAGACCAAGCAAATCCAGAACA GAATCCTTTTGCTCTTTCCCAAGGGGTCCCAG |
| Conceptual translation |
MYNMSDHGTGLFILLGIPGLEQYHVWISIPFCLIYLMAVVANSILLYLIVVEHSLHAPMF FFLSMLAITDLILSTTCVPKTLSIFWFGPQ/SFPGCLTQLFFLHYSFVLDSAILLAMAF DRYMAICSPLRYTTILTPKTIVKIAVGICFRSFCVFVPCVFLVNRLPFCRTHIISHTYCE HIGVAQLACADISINIWCGFCVPIMTVMTDVILIAVSYTLILCAVFCLPSQDARQKALCS CGSHVCVILIFYIPAFFSILAHCFGHNVPHTFHIMFANLYVIIPPALNSIVYRIKTKQIQ NRILLLFPKGSQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 5,551,736 | 5,551,736 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,551,772 | 5,551,772 | SNP | C/A | 1000GP (CEU) | |
| 11 | 5,551,794 | 5,551,794 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,551,814 | 5,551,814 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,551,824 | 5,551,824 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,551,843 | 5,551,843 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,551,903 | 5,551,903 | SNP | G/T | 1000GP (CEU) | |
| 11 | 5,551,930 | 5,551,930 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,551,963 | 5,551,963 | SNP | A/T | 1000GP (CHBJPT) | |
| 11 | 5,552,085 | 5,552,085 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,552,120 | 5,552,120 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,552,127 | 5,552,127 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,552,350 | 5,552,350 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,552,471 | 5,552,471 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,572,966 | 5,572,966 | SNP | G/A | rs423501 (DbSNP) | |
| 11 | 5,573,002 | 5,573,002 | SNP | A/C | rs55690955 (DbSNP) | |
| 11 | 5,573,024 | 5,573,024 | SNP | A/G | rs60009475 (DbSNP) | |
| 11 | 5,573,044 | 5,573,044 | SNP | A/G | rs9666981 (DbSNP) | |
| 11 | 5,573,054 | 5,573,054 | SNP | A/G | rs9666982 (DbSNP) | |
| 11 | 5,573,073 | 5,573,073 | SNP | G/A | rs1694674 (DbSNP) | |
| 11 | 5,573,133 | 5,573,133 | SNP | G/T | rs62623383 (DbSNP) | |
| 11 | 5,573,160 | 5,573,160 | SNP | C/G | rs401835 (DbSNP) | |
| 11 | 5,573,168 | 5,573,168 | SNP | C/G | rs383475 (DbSNP) | |
| 11 | 5,573,193 | 5,573,193 | SNP | A/T | rs11038071 (DbSNP) | |
| 11 | 5,573,221 | 5,573,221 | SNP | G/T | rs9667237 (DbSNP) | |
| 11 | 5,573,315 | 5,573,315 | SNP | G/A | rs382979 (DbSNP) | |
| 11 | 5,573,350 | 5,573,350 | SNP | A/C | rs62623418 (DbSNP) | |
| 11 | 5,573,357 | 5,573,357 | SNP | T/C | rs408409 (DbSNP) | |
| 11 | 5,573,580 | 5,573,580 | SNP | G/T | rs10500651 (DbSNP) | |
| 11 | 5,573,701 | 5,573,701 | SNP | A/C | rs2647602 (DbSNP) | |
| 11 | 5,573,710 | 5,573,710 | SNP | G/A | rs2570348 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
| 11 | 5,570,895 | 5,573,926 | CopyNumber | #62 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.