OR52K3P Olfactory Receptor
| Gene Symbol | OR52K3P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | K |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.3.7P, ORL3562 |
| External Ids | HGNC: 15224 GeneBank: AB065554, AF143328, NG_004319 ORDB: ORL3562 |
| Build #39 labels | OR52K3P |
| Chromosomal location | 11:4,474,809-4,475,755 (+) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52K1 | 83.44% | 308 |
| OR52K2 | 86.54% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52K1B | 81% | 313 |
| Mouse | Or52k2 | 82% | 305 |
| Rat | Or52k2 | 82% | 305 |
| Cow | OR52K2 | 84% | 305 |
| Cow | OR52K1 | 82% | 308 |
| Orang | OR52K2BP | 88% | 305 |
| Orang | OR52K2 | 86% | 305 |
| Horse | OR52K1 | 80% | 314 |
| Chimp | OR52K2 | 87% | 305 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | T83107 |
| mRNA | AF143328 |
| GNF Atlas2 | gnf1h10651_at |
Sequence information
| Nucleotide sequence |
ATGTCAGCCTCCAGTATCACCTCAACACATCCAACTTCCTTCTTGTTGATGGGGATTCCA GGCCTGGAGCACCTGCACATCTGGATCTCCATCCCCTTCTCAGCATATACACTGGCCCTG CTTGGAAACTGCACCCTCCTTCTCATCATCCAGGCTGATGCAGCCCTCCATGAGCCCATA TACCTCTTTCTGGCCATGTTGGCAGCCATCGACCTGGTCCTTTCCTCCTCAGCATTGCCC AAAATGCTTGCCATATTCTGGTTCAGGGATCGGGAGATCAACTTTTTTGCCTGTCTGGTC CAGATGTTCTTCCTTCACTCCTTCTCCATCATGGAGTCAGCAGTGCTGCTGGCCATGGCC TTTGACCGCTATGTGGCCATCTGCAAGCCACTGCACTACACCACGGTCCTGACTGGGTCC CTCATCACCAAGATTGGCATGGCTGCTGTGGCCCGGGCTGTGACACTAATGACTCCACTC CCCTTCCTGCTGAGATGTTTCCACTACTGCCGAGGCCCAGTGATTGCCCGCTGCTACTGT GAACACATGGCTGTGGTCAGGCTGGCTGTGGGAACACTAGCTTCAACAATATCTATGGCA TTGCTGTGGCCATGTTTATTGGAGTGTTGGATCTATTCTTTATCATCCTATCTTATATCT TTATCCTTCAGGCAGTTCTACAACTCTCCTCTCAGGAGGCCCGCTACAAAGCATTTGGGA CATGTGTCTCTCACATAGGTGCCATCTTAGCCTTCTACACACCTTCAGTCATCTCTTCAG TCATGCACCGTGTGGCCCGCTGTGCTGCGCCACACGTCCACATTCTCCTCGCCAATTTCT ATCTGCTCTTCCCACCCATGGTCAATCCCATCATCTACGGCGTTAAGACCAAGCAGATCC GTGACAGTCTTGGGAGTATTCCCGAGAAAGGATGTGTGAATAGAGAG |
| Conceptual translation |
MSASSITSTHPTSFLLMGIPGLEHLHIWISIPFSAYTLALLGNCTLLLIIQADAALHEPI YLFLAMLAAIDLVLSSSALPKMLAIFWFRDREINFFACLVQMFFLHSFSIMESAVLLAMA FDRYVAICKPLHYTTVLTGSLITK\AWLLWPGLXXLHS/FLLRCFHYCRGPVIARC YCEHMAVVRL/CGNTSFNNIYGIAVAMFIGVLDLFFIILSYIFILQAVLQLSSQEARYK AFGTCVSHIGAILAFYTPSVISSVMHRVARCAAPHVHILLANFYLLFPPMVNPIIYGVKT KQIRDSLGSIPEKGCVNRE Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 4,496,613 | 4,496,613 | SNP | A/C | rs9633905 (DbSNP) | |
| 11 | 4,496,218 | 4,496,218 | SNP | A/G | rs331505 (DbSNP) | |
| 11 | 4,496,755 | 4,496,755 | SNP | A/G | rs2278169 (DbSNP) | |
| 11 | 4,496,212 | 4,496,212 | SNP | A/G | rs331504 (DbSNP) | |
| 11 | 4,496,846 | 4,496,846 | SNP | C/T | rs2278170 (DbSNP) | |
| 11 | 4,496,492 | 4,496,492 | SNP | C/T | rs28648512 (DbSNP) | |
| 11 | 4,496,961 | 4,496,961 | SNP | C/T | rs2278172 (DbSNP) | |
| 11 | 4,496,916 | 4,496,916 | SNP | C/T | rs2278171 (DbSNP) | |
| 11 | 4,496,416 | 4,496,416 | SNP | C/T | rs60459115 (DbSNP) | |
| 11 | 4,496,173 | 4,496,173 | SNP | C/T | rs167946 (DbSNP) | |
| 11 | 4,474,878 | 4,474,878 | SNP | C/T | 1000GP (CEU) | |
| 11 | 4,475,383 | 4,475,383 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 4,475,616 | 4,475,616 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 4,475,686 | 4,475,686 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 4,475,731 | 4,475,731 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 4,475,525 | 4,475,525 | SNP | G/A | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,055,945 | 4,510,188 | CopyNumber | Variation_3834 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR52K3P.aApr07-unspliced | main_exon | CDS_partial | chr11 | 4,475,240 | 4,475,755 | + |
| 3UTR | chr11 | 4,475,755 | 4,476,395 | + | ||