OR52P1P Olfactory Receptor
| Gene Symbol | OR52P1P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | P |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-66, HsOR11.3.76P |
| External Ids | HGNC: 15232 GeneBank: AB065534, BK004746, NG_004220 |
| Build #39 labels | OR52P1 |
| Chromosomal location | 11:5,726,502-5,727,461 (+) |
| Cluster | 11@6 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52L1 | 59.12% | 296 |
| OR52L2P | 58.45% | 296 |
| OR52P2P | 58.45% | 296 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52P1 | 88% | 321 |
| Mouse | Or52p1 | 87% | 321 |
| Rat | Or52p1 | 87% | 321 |
| Cow | OR52P1 | 88% | 309 |
| Orang | OR52P1 | 93% | 321 |
| Horse | OR52AE13 | 57% | 303 |
| Chimp | OR52P1 | 94% | 318 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | DQ656033 |
Sequence information
| Nucleotide sequence |
ATGGAATCTCCTCATCACACTGATGTTGACCCTTCTTGTCTTCTTCCTCCTGGGCATCCC AGGTCTGGAACAATTTCATTTGTGGCTCTCACTCCCTGTGTGTGGCTTAGGCACAGCCAC AATTGTGGGCAATATAACTATTCTGGTTGTTGTTGCCACTGAACCAGTCTTGCACAAGCC TGTGTACCTTTTTCTGTGCATGCTCTCAACCATCGACTTGGCTGCCTCTGTCTCCACAGT TCCCAAGCTACTGGCTATCTTCTGGTGTGGAGCCGGACATATATCTGCCTCTGCCTGCCT GGCACAGATGTTCTTCATTCATGCCTTCTGCATGATGGAGTCCACTGTGCTACTGGCCAT GGCCTTTGATCGCTACGTGGCCATCTGCCACCCACTCCGCTATGCCACAATCCTCACTGA CACCATCATTGCCCACATAGGGGTGGCAGCTGTAGTGCGAGGCTCCCTGCTCATGCTCCC ATGTCCCTTCTTTATTGGGCGTTTGAACTTCTGCCAAAGCCATGTGATCCTACACACGTA CTGTACATGGCTGTGGTGAAGCTGGCCTGTGGAGACACCAGGCCTAACCGTGTGTATGGG CTGACAGCTGCACTGTTGGTCACTGGGGTTGACTTGTTTTGCATTGGTCTCTCCTATGCC CTAATTGCACAAGCTGTCCTTCGCCTCTCATCCCATGAAGCTCGGTCCAAGGCCCTAGGG ACCTGTGGTTCCCATGTCTGTGTCATCCTCATCTCTTATACACCAGCCCTCTTCTCCTTT TTTACACACCGCTTTGGCCATCACGTTCCAGTCCATATTCACATTCTTTTGGCCAATGTT TATCTGCTTTTGCCACCTGCTCTTAATCCTGTGGTATATGGAGTTAAGACCAAACAGATC CGTAAAAGAGTTGTCAGGGTGTTTCAAAGTGGGCAGGAAATGGGCATCAAGGCATCTGAG |
| Conceptual translation |
MESPH\LMLTLLVFFLLGIPGLEQFHLWLSLPVCGLGTATIVGNITILVVVATEPVLHK PVYLFLCMLSTIDLAASVSTVPKLLAIFWCGAGHISASACLAQMFFIHAFCMMESTVLLA MAFDRYVAICHPLRYATILTDTIIAHIGVAAVVRGSLLMLPCPFFIGRLNFCQSHVILHT YC/MAVVKLACGDTRPNRVYGLTAALLVTGVDLFCIGLSYALIAQAVLRLSSHEARSKA LGTCGSHVCVILISYTPALFSFFTHRFGHHVPVHIHILLANVYLLLPPALNPVVYGVKTK QIRKRVVRVFQSGQEMGIKASE Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,747,768 | 5,747,768 | Del(1) | -/T | rs34463490 (DbSNP) | |
| 11 | 5,747,767 | 5,747,767 | Del(1) | -/T | rs67111336 (DbSNP) | |
| 11 | 5,748,277 | 5,748,276 | Ins(4) | -/GAGC | rs35948000 (DbSNP) | |
| 11 | 5,748,276 | 5,748,275 | Ins(4) | -/GAGC | rs10627966 (DbSNP) | |
| 11 | 5,748,632 | 5,748,632 | SNP | A/C | rs12223005 (DbSNP) | |
| 11 | 5,747,744 | 5,747,744 | SNP | A/C | rs10838598 (DbSNP) | |
| 11 | 5,748,669 | 5,748,669 | SNP | A/G | rs12224409 (DbSNP) | |
| 11 | 5,748,222 | 5,748,222 | SNP | C/T | rs7933860 (DbSNP) | |
| 11 | 5,748,354 | 5,748,354 | SNP | C/T | rs7944807 (DbSNP) | |
| 11 | 5,748,396 | 5,748,396 | SNP | G/T | rs7934096 (DbSNP) | |
| 11 | 5,748,642 | 5,748,642 | SNP | G/T | rs12224687 (DbSNP) | |
| 11 | 5,748,038 | 5,748,038 | SNP | G/T | rs11038865 (DbSNP) | |
| 11 | 5,726,514 | 5,726,514 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 5,726,808 | 5,726,808 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 11 | 5,726,895 | 5,726,895 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 11 | 5,726,992 | 5,726,992 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,727,045 | 5,727,045 | SNP | T/C | 1000GP (CEU) | |
| 11 | 5,727,047 | 5,727,047 | SNP | C/G | 1000GP (CEU) | |
| 11 | 5,727,124 | 5,727,124 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 5,727,166 | 5,727,166 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,727,402 | 5,727,402 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 5,727,412 | 5,727,412 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,727,439 | 5,727,439 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | C/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,730,377 | 5,970,717 | CopyNumber | Variation_3836 (DGV) |
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.