OR52Q1P Olfactory Receptor
| Gene Symbol | OR52Q1P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | Q |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.3.89P, ORL3525 |
| External Ids | HGNC: 15234 GeneBank: NG_004219 ORDB: ORL3525 |
| Build #39 labels | OR52Q1P |
| Chromosomal location | 11:5,903,635-5,904,478 (+) |
| Cluster | 11@6 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52E2 | 41.67% | 228 |
| OR52E3P | 40% | 240 |
| OR52E5 | 45.05% | 202 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52E11P | 43% | 219 |
| Mouse | Or52e15 | 41% | 241 |
| Rat | Or52e2 | 42% | 240 |
| Cow | OR52E58 | 44% | 228 |
| Orang | OR52J1 | 41% | 242 |
| Horse | OR52E64P | 53% | 202 |
| Chimp | OR52AI1P | 74% | 208 |
Sequence information
| Nucleotide sequence |
TGCTTCAAGCCAATCTAAAAGAATTCAACTTTGTTTATTATTTCAAAATTTCAAGGCTGC TGAAAGGTAGGTCTTTATACACAGTCACTTTATTTGCTAGCTGAGTATTTTCATCGGGGG CAACTGATGAAAATGTTGACTTCCACTAACCTAAGCCTGTCCGTTGTTACTATCGTATCT TCCAGTTCAACGTCAGGGAAATAGTTTTTGGTGCTTTCCTTGTTTATATACAGATGTTTA TGACTTATCTATGCACTGGCCTGGAATCTGGGGTACTGATAATCCTGGCCATAGACCACT ATGTCGTAATTCGCAATCCACTGAGATATACCATGATTCTCATGAACAATGTGGTAGCCA TCCTAGGAAGTCATGATAATTAGATCTTTAATCTTTATCATCCCTTTTGAGTTTCTCATC TTGCTGTTGTCATTCTGTGCTGCCCATATCATCCCCCACACCAAATGTGAGCACATGGGC ATTGCCCATCTTTCCTGTGCCAGTATCAGAGCCAATAATATGTTTGGGATGGTTGCCTTT TTGTGGGATTTATTGACCTTATTGCAATTGGTTTCTCCTATGTAAAGAAACTACACACTG TTTCACTTACCACCATGGAATGGCCAGTTCGAGGCTCTCAATACCTGTGGTTCCCATGTT TGTCATGCTCATCTTCTACATCCCAGTATTTTTTTTCTGATACACTGCTTGGTGAAAGCA TCCCTGCTATATTCGTATATTTCTGGCCAATGTATATACGGTTGTTCTACCTGTATTCAA CCCTGTTATCTATGGGATCAGGAAAAAACAGATCCCAGACTAGGGTATAGACCTAAAGAC ATTT |
| Conceptual translation |
CFKPIXNSTLFIISKFQGCXRXFIHSHFICXSIFIGGNXKCXPLTXCPLLLSY LPVQRQGNSFWCFPCL\QMFMTYLCTGLESGVLIILAIDHYVVIRNPLRYTMILMNNVV AILGSHDNXFNLYH/LLS/LILLLSFCAAHIIPHTKCEHMGIAHLSCASIRANNMFG MVAFLWDLLTLLQLVSPMXNYTLFHLPPWNGQFEALNTCGSHVCHAHLLHPS/F/FXbr/>YTAWXHPCYIRIFLANVYTVVLPVFNPVIYGIRKKQIPDXIDLKTF Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,925,132 | 5,925,131 | Ins(1) | -/A | rs36114926 (DbSNP) | |
| 11 | 5,925,129 | 5,925,129 | SNP | A/G | rs10838806 (DbSNP) | |
| 11 | 5,925,369 | 5,925,369 | SNP | A/G | rs17808328 (DbSNP) | |
| 11 | 5,925,561 | 5,925,561 | SNP | C/G | rs11600820 (DbSNP) | |
| 11 | 5,925,178 | 5,925,178 | SNP | C/G | rs4758183 (DbSNP) | |
| 11 | 5,925,317 | 5,925,317 | SNP | C/T | rs72889307 (DbSNP) | |
| 11 | 5,925,073 | 5,925,073 | SNP | C/T | rs73398301 (DbSNP) | |
| 11 | 5,925,432 | 5,925,432 | SNP | C/T | rs11039518 (DbSNP) | |
| 11 | 5,925,649 | 5,925,649 | SNP | G/T | rs10838807 (DbSNP) | |
| 11 | 5,903,899 | 5,903,899 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,903,948 | 5,903,948 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,904,139 | 5,904,139 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,904,202 | 5,904,202 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,904,419 | 5,904,419 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,868,055 | 6,007,613 | CopyNumber | Variation_2903 (DGV) |
| 11 | 5,730,377 | 5,970,717 | CopyNumber | Variation_3836 (DGV) |
| 11 | 5,921,129 | 5,963,801 | CopyNumber | Variation_6928 (DGV) |
| 11 | 5,885,711 | 5,969,185 | CopyNumber | Variation_8676 (DGV) |
| 11 | 5,885,711 | 5,934,044 | CopyNumber | Variation_8677 (DGV) |
| 11 | 5,899,885 | 5,935,103 | CopyNumber | Variation_9650 (DGV), Variation_48860 (DGV), Variation_53917 (DGV) |
| 11 | 5,899,885 | 5,935,102 | CopyNumber | Variation_29603 (DGV) |
| 11 | 5,883,376 | 5,935,626 | CopyNumber | Variation_30541 (DGV) |
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
| 11 | 5,885,709 | 5,935,510 | CopyNumber | Variation_37668 (DGV) |
| 11 | 5,875,867 | 5,935,103 | CopyNumber | Variation_48859 (DGV) |
| 11 | 5,899,885 | 5,959,757 | CopyNumber | Variation_53792 (DGV) |
| 11 | 5,871,831 | 5,935,103 | CopyNumber | Variation_53856 (DGV) |
| 11 | 5,924,765 | 5,927,708 | CopyNumber | #136 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.