OR52Z1P Olfactory Receptor
| Gene Symbol | OR52Z1P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | Z |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.3.53P |
| External Ids | HGNC: 19596 GeneBank: NG_004304 |
| Build #39 labels | OR52Z1P |
| Chromosomal location | 11:5,177,720-5,178,610 (-) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks | Segregating Pseudo Gene, a polymorphism of G->del at position 22 (rs11320735) |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52B6 | 60.27% | 297 |
| OR52D1 | 59.25% | 292 |
| OR52E8 | 59.66% | 295 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52Z1 | 84% | 300 |
| Dog | OR52Z1B | 83% | 300 |
| Mouse | Or52z1 | 82% | 300 |
| Rat | Or52z1 | 81% | 300 |
| Cow | OR52Z1 | 83% | 300 |
| Orang | OR52H18 | 60% | 295 |
| Horse | OR52Z1 | 82% | 299 |
| Chimp | OR52B6P | 60% | 297 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529243 |
Sequence information
| Nucleotide sequence |
ATGGGAATCCCAGGGCTGGAAGGCTTGCATACCTGGATCTCCATCCCTTTTTCTTTTATG TACATTGTGGCTGTTGCAGGCAATATCTTCTTGATCTTCCTGATCATGACTGAGCGCAGT CTCCATGAGCCCATGTATCTCTTCCTATCCATGCTGGCCTCAGCCGACTTCCTGCTCGCC ACTGCTGCAGCCCCTAAGGTGCTGGCTATCCTCTGGTTCCACTCCATGGACATATCCTTT GGTAGTTGTGTGTCTCAGATGTTCTTCATACATTTCATCTTTGTGGCAGAATCTGCTATT CTCCTGGCAATGGCATTTGACCGCTATGTGGCCATCTGTTACCCACTGAGATACACCATT TTAACCTCATCAGCCGTCAGGAAGATTGGCATAGCAGCTGTGGTCAGGAGCTTTTTCATC TGCTGTCCGTTCATCTTCCTGGTATACCGACTTACATATTGTGGGAGAAACATCATTCCT CATTCCTACTGTGAGCACATTGCCAGATTGGCTTGTGGCAATATCAATGTCAATATCATT TATGGCCTCACTGTGGCCCTACTCTCTACAGGACTGGATATAGTGCTTATCATTATATCC TACACAATGATCCTTCACTCAGTGTTTCAGATATCTTCCTGGGCTGCCAGGTTCAAGGCC CTTAGTACGTGCGGCTCTCATATCTGTGTCATATTTATGTTCTATACCCCAGCATTCTTT TCATTTCTTGCCCATCGCTTTGGAGGTAAAACCATCCCTCACCACATTCACATCCTAGTG GGCAGTCTCTATGTGTTAGTGCCCCCTATGCTAAACCCCATCATTTATGGGGTGAAGACC AAACAAATTAAAGATCGAGTGATTTTGCTTTTCTCTCCTATCAGTGTATGC |
| Conceptual translation |
MGIPGLEGLHTWISIPFSFMYIVAVAGNIFLIFLIMTERSLHEPMYLFLSMLASADFLLA TAAAPKVLAILWFHSMDISFGSCVSQMFFIHFIFVAESAILLAMAFDRYVAICYPLRYTI LTSSAVRKIGIAAVVRSFFICCPFIFLVYRLTYCGRNIIPHSYCEHIARLACGNINVNII YGLTVALLSTGLDIVLIIISYTMILHSVFQISSWAARFKALSTCGSHICVIFMFYTPAFF SFLAHRFGGKTIPHHIHILVGSLYVLVPPMLNPIIYGVKTKQIKDRVILLFSPISVC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,199,819 | 5,199,819 | Del(1) | -/C | rs11320735 (DbSNP) | |
| 11 | 5,199,818 | 5,199,818 | Del(1) | -/C | rs5789371 (DbSNP) | |
| 11 | 5,199,345 | 5,199,344 | Ins(3) | -/ATG | rs67207242 (DbSNP) | |
| 11 | 5,199,342 | 5,199,341 | Ins(6) | -/ATGCCC | rs67012514 (DbSNP) | |
| 11 | 5,199,344 | 5,199,343 | Ins(6) | -/CCCATG | rs61208233 (DbSNP) | |
| 11 | 5,190,915 | 5,190,915 | large insertion | 79137bp insertion | rs63751690 (DbSNP) | |
| 11 | 5,193,765 | 5,193,765 | large insertion | 79487bp insertion | rs63751678 (DbSNP) | |
| 11 | 5,174,207 | 5,174,207 | large insertion | 89773bp insertion | rs63751660 (DbSNP) | |
| 11 | 5,168,239 | 5,168,239 | large insertion | 91130bp insertion | rs63751649 (DbSNP) | |
| 11 | 5,159,765 | 5,159,765 | large insertion | 92848bp insertion | rs63751674 (DbSNP) | |
| 11 | 5,199,222 | 5,199,222 | SNP | A/C | rs7924390 (DbSNP) | |
| 11 | 5,199,776 | 5,199,776 | SNP | A/G | rs74052703 (DbSNP) | |
| 11 | 5,199,708 | 5,199,708 | SNP | A/T | rs6578563 (DbSNP) | |
| 11 | 5,199,660 | 5,199,660 | SNP | C/T | rs6578561 (DbSNP) | |
| 11 | 5,199,528 | 5,199,528 | SNP | C/T | rs73398632 (DbSNP) | |
| 11 | 5,199,208 | 5,199,208 | SNP | C/T | rs7927539 (DbSNP) | |
| 11 | 5,199,645 | 5,199,645 | SNP | C/T | rs6578560 (DbSNP) | |
| 11 | 5,199,675 | 5,199,675 | SNP | C/T | rs6578562 (DbSNP) | |
| 11 | 5,199,490 | 5,199,490 | SNP | G/T | rs74051402 (DbSNP) | |
| 11 | 5,177,811 | 5,177,811 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,177,978 | 5,177,978 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,177,992 | 5,177,992 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,178,203 | 5,178,203 | SNP | C/T | 1000GP (CEU) | |
| 11 | 5,178,415 | 5,178,415 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,178,430 | 5,178,430 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,178,445 | 5,178,445 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 5,178,478 | 5,178,478 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 11 | 5,178,552 | 5,178,552 | SNP | A/G | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | A/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.