OR56B3P Olfactory Receptor
| Gene Symbol | OR56B3P1 (View this gene in GeneCards) |
| Family | 56 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-68, HsOR11.3.99P, ORL3555 |
| External Ids | HGNC: 15247 GeneBank: AB065512, BK004707, NG_004390 ORDB: ORL3555 |
| Build #39 labels | OR56B3P |
| Chromosomal location | 11:6,128,610-6,129,553 (+) |
| Cluster | 11@6 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR56B4 | 75.31% | 320 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR56B6 | 79% | 321 |
| Mouse | Or56b34 | 74% | 321 |
| Rat | Or56b6b | 71% | 321 |
| Cow | OR56B42 | 67% | 325 |
| Orang | OR56B4 | 75% | 320 |
| Horse | OR56B46 | 78% | 321 |
| Chimp | OR56B4 | 74% | 320 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h11138_at |
Sequence information
| Nucleotide sequence |
ATGGATATTGGCCTGAGTATAGCCAATAGCTCAGGGTTTCAACTGTCTGAGTTCATTCTG ATAGGGTTCCCAGGCATTCATGAGTGGCAGCACTGGCTCTCCCTGCCCTTAGCTCTTGGT GCCAATCTCCTCATCATAATCACCATTCAACATGAGACCATGCTACATGAACCCATGTAC CATTTGCTGGGCATATTAGCAGTGGTGGACATTGGCCTGGCCACCACCATCATGCCCAAG ATCCTGGCCATCTTCTGGTTTGATGCCAAGGCCATCAGCCTCCCTGAGTGTTTTGCTCAG ATCTATGCCATCCACTCTTTCATGTGCATGGAGTCAGGCATCTTCCTCTGCATGGCAGTG GATAGATATATGGCCATTTGTTATCCCCTTCAGTACACTTCCATAGTTACTGAAGCTTTT GTCATCAAAGCCACACTGTCAGTAGTGCTCAGGAATGGCCTGTTGACCATCCCAGTGCCA GTATTGGCTGCCCAGCGACACTACTGCTCCAGGAATGAGATTGATCAGTGCCTCTGCTCT AACTTGGGGGTCACAAGTCTGGCCTGTGATGACACCACTATTAACAGGTTTTACCAGCTG GCCTTGGTCTGGGTTGTGGTTGGGAGTGACATGGGTCTGGTCTTTGCTTCCTATTCTTTG ATTATTCACTCAGTGCTGAAGCTGAACTCTGCTAAAGCAACATCTAAGGCCCTGAATACC TGCAGCTCCCACCTTATCCTCATTCTCTTTTTCTACACAGCTATTATTGTAGTATCTGTC ACCACCTGGCAGGAAGAAGGGCTCCCCGCATCCCTGTTCTCCTCAATGTGCTGCATATTG TCATCCCCTCAGCCCTTAACCCCATAGTATATGCCCTTAGGACCTAGGAGCTGAGAGCAG GCTTCCAGAAGCTGCTTGGTTTGGGCGAGTATGTGTCCAGGAAG |
| Conceptual translation |
MDIGLSIANSSGFQLSEFILIGFPGIHEWQHWLSLPLALGANLLIIITIQHETMLHEPMY HLLGILAVVDIGLATTIMPKILAIFWFDAKAISLPECFAQIYAIHSFMCMESGIFLCMAV DRYMAICYPLQYTSIVTEAFVIKATLSVVLRNGLLTIPVPVLAAQRHYCSRNEIDQCLCS NLGVTSLACDDTTINRFYQLALVWVVVGSDMGLVFASYSLIIHSVLKLNSAKATSKALNT CSSHLILILFFYTAIIVVSVTTWQEEGLPAS/VLLNVLHIVIPSALNPIVYALRTXLR AGFQKLLGLGEYVSRK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 6,150,405 | 6,150,405 | SNP | A/G | rs61743156 (DbSNP) | |
| 11 | 6,150,139 | 6,150,139 | SNP | A/G | rs74055147 (DbSNP) | |
| 11 | 6,150,628 | 6,150,628 | SNP | A/G | rs74055148 (DbSNP) | |
| 11 | 6,150,738 | 6,150,738 | SNP | G/A | rs325637 (DbSNP) | |
| 11 | 6,150,568 | 6,150,568 | SNP | T/C | rs325638 (DbSNP) | |
| 11 | 6,129,338 | 6,129,338 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 6,129,508 | 6,129,508 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.