OR5AL2P Olfactory Receptor
| Gene Symbol | OR5AL2P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | AL |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.11.65P, ORL3517 |
| External Ids | HGNC: 14850 GeneBank: NG_004143 ORDB: ORL3517 |
| Build #39 labels | OR5AL2P |
| Chromosomal location | 11:56,393,729-56,394,648 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5AL1P | 72.4% | 308 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5AL2 | 85% | 308 |
| Mouse | Or5al1 | 73% | 308 |
| Rat | Or5al5b | 73% | 308 |
| Cow | OR5AL2 | 82% | 308 |
| Orang | OR5E1P | 52% | 307 |
| Horse | OR5AL2 | 86% | 308 |
| Chimp | OR5AL1 | 73% | 308 |
Sequence information
| Nucleotide sequence |
ATGGCAAAAGGCAATCATTCATCAGTGACTGAGTTCATCCTCCTAGGGCTCACAGATAAT CAGGAACTTCAAGTCATTCTCTTTGGTGTATTCCTACTGATTTACTTAGTTACTGTGTTG GGTAATCTTGGTTTGATTGTGCTAATCCATATCAGTCCTCAGCTTCACACACCTATGTAT TTTTTCCTCAGCCATCTGGCTTTTGTGGATTTTTACGGTACCTCTGCTATCACTCCAAAC ACCCTTGTCAACTCTTTGCATGAAATTAAAAGCATGTCATTTTATGCATGTGCCACTCAA GTGTGCTGCTTCATTACACTTTCAGTCTGGGAATTATTGTTGCTCTCATGGCATATGATC GGTATGTTGCCATCTGCAACCCTTTACTCTATGTAGTTCTCATGCCTAGGAGACTCTGCA TTCAAATGGTCACTGGCTTATATATTTATGGTTTCACCATGGGACTCATACAAGCAGTGG CCACATTCCACATGTCGTTTTGTGACTCTAATGTGGTCAACCAGTTCTACTGTGATGATG TTCCTCTGATTGCTCTGGCTTGTTCTGATACACAAGTCAAGGAATTGATGTTGTTCATCA TTGCTGCGTTCAATGTTTTTTGTTCTCTTATCATTGTTCTCATCTCCTATGTATTCATCG TCTTTGCTATCTAAGGATCCACTCTGCCGTAGGAAGACAGAAAGCCTTTTCTACCTGTGC TTCTCACATGTTTTCTATTTCCATATATTATGGGACCCTCAGTTTTATGTACCTACAGCC TAAGTCAAGCCACTCACTAGATAAAGACAAATTTGCCTCAGTATTCTATGCAGTGGTGAT TCCCATGCTAAACCCATTGATCTATAGCTTGAGGAATCAAGAGGTAAAAAAATGCTATGA AAAAAATTATTGAAAAAATG |
| Conceptual translation |
MAKGNHSSVTEFILLGLTDNQELQVILFGVFLLIYLVTVLGNLGLIVLIHISPQLHTPMY FFLSHLAFVDFYGTSAITPNTLVNSLHEIKSMSFYACATQVCCFITLSVWE/IVALMAY DRYVAICNPLLYVVLMPRRLCIQMVTGLYIYGFTMGLIQAVATFHMSFCDSNVVNQFYCD DVPLIALACSDTQVKELMLFIIAAFNVFCSLIIVLISYVFIV/CYLRIHSAVGRQKAFS TCASHMFSISIYYGTLSFMYLQPKSSHSLDKDKFASVFYAVVIPMLNPLIYSLRNQEVK\br/>NAMKKIIEKM Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 56,161,293 | 56,161,293 | SNP | A/T | rs12285921 (DbSNP) | |
| 11 | 56,161,347 | 56,161,347 | SNP | A/T | rs1573510 (DbSNP) | |
| 11 | 56,161,421 | 56,161,421 | SNP | A/G | rs1573511 (DbSNP) | |
| 11 | 56,161,523 | 56,161,523 | SNP | C/T | rs12277883 (DbSNP) | |
| 11 | 56,161,656 | 56,161,656 | SNP | A/T | rs1573512 (DbSNP) | |
| 11 | 56,161,761 | 56,161,761 | SNP | C/G | rs1002773 (DbSNP) | |
| 11 | 56,161,840 | 56,161,840 | SNP | G/T | rs17150510 (DbSNP) | |
| 11 | 56,162,014 | 56,162,014 | SNP | A/G | rs17543899 (DbSNP) | |
| 11 | 56,162,090 | 56,162,090 | Del(1) | -/A | rs34417972 (DbSNP) | |
| 11 | 56,162,096 | 56,162,096 | Del(1) | -/A | rs11336627 (DbSNP) | |
| 11 | 56,393,817 | 56,393,817 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,393,871 | 56,393,871 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,393,945 | 56,393,945 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,394,047 | 56,394,047 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 56,394,180 | 56,394,180 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,394,285 | 56,394,285 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 56,394,538 | 56,394,538 | SNP | A/G | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 207 (Hasin) | |||
| 11 | 56,161,105 | 56,164,124 | CopyNumber | #68 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.