Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR5AP1P Olfactory Receptor

Gene Symbol OR5AP1P1 (View this gene in GeneCards)
Family 5
Subfamily AP
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-205, HsOR11.11.83P, ORL3560
External Ids HGNC: 15257   GeneBank: AB065741, BK004602, NG_004209   ORDB: ORL3560   
Build #39 labels OR5AP1P
Chromosomal location 11:56,633,163-56,634,102 (-)
Cluster 11@56
Synteny CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR5AP2 64.9% 302

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR5AP1 85% 309
Mouse Or5ap2 68% 302
Rat Or5ap2 68% 305
Cow OR5AP9P 72% 311
Orang OR5B1P 57% 304
Horse OR5AP1 82% 309
Chimp OR5AP2 66% 302

Sequence information

Nucleotide sequence ATGAGAAACTTTACACCACTGTCTGGATTTATTATCCTGGGATTCACGGATCACCCAGAA
TTACAGTGTCTTCTTTTTGTGTTGTTTCTTCTCATCTATATGTTCACCGTTGTTGGAAAT
CTTGGCATGATTCTATTAATCAAGATTGACTCACATCTCCATACTCCAATGTACTTTTTC
CTCAGTAACTTGTGCCTTGTTGACTTCTGTTATTCTTCTGTCATTGCCCCTAATATGCTG
ATAAATTTCTGGGTGGAGAACCCAGTCATTTCATTTAATGAATGTGCCACTCAATTCTTC
TTTTTTGGCTCCTTTGCTGGCATTGAGGGTTTTCTGTTGGCTGTCATGGCCTATGACTGT
TATGTGGCCATCTGCAAGCCTCTGCTTTATACAGTCCTGATGTCACCCCACCTCAGTGCC
CTCCTGGTGTTAGCCACATATCTTTTGGGCTTTGTAAATGCTGCCATTCACACTGGCTTC
ACCTTCCAGCTGTCATTCTGCCACTCCAATATCATTAACTATTTTTTTTGTGATATTCCA
CCCCTCCTGAAACTCTTGTTCTGATACACACATCAATGAGGTTGTCATTTTTGCCTTTGC
CAGTTTTAATGAATTGAGCTGTCTCCTACTGATTCTTGTTTCCTGTCTCTACATCCTTGC
TGCCATCTTGAAGATCCACTCTGCAGAAGGGAGGCACAAGGCCTTCTCCACCTGTGCTTC
CCACTTGGCGGTGGTCACTATCTTCTTTGGGACAATCCTGTTCATGTATCTCTGCGTCCC
AGCTCCAGCTACTCAATGGATCAAGACAAAGTGGTGTCTGTCTTACACAGTAGTCATCCC
CATGTTGAATCCTTTCATCTATAGTTTGAGAAACAAGGAAGTCAAAGCTTCTTTAAGTAA
AATGTTTAAAACAGTCTCTTATATCTCTACTTAGAATCAT
Conceptual translation MRNFTPLSGFIILGFTDHPELQCLLFVLFLLIYMFTVVGNLGMILLIKIDSHLHTPMYFF
LSNLCLVDFCYSSVIAPNMLINFWVENPVISFNECATQFFFFGSFAGIEGFLLAVMAYDC
YVAICKPLLYTVLMSPHLSALLVLATYLLGFVNAAIHTGFTFQLSFCHSNIINYFFCDIP
PLLKL\SDTHINEVVIFAFASFNELSCLLLILVSCLYILAAILKIHSAEGRHKAFSTCA
SHLAVVTIFFGTILFM/SLRPSSSYSMDQDKVVSV//TVVIPMLNPFIYSLRNKEVK
ASLSKMFKTVSYISTXH

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 56,401,219 56,401,219 SNP A/G rs61903306 (DbSNP)
11 56,401,476 56,401,476 SNP A/T rs17548679 (DbSNP)
11 56,633,565 56,633,565 SNP G/A 1000GP (CEU)
11 56,633,743 56,633,743 SNP A/G 1000GP (CEU)
11 56,634,000 56,634,000 SNP A/T 1000GP (CEU)
11 100 -100 SNP G/A 1000GP (YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
11 56,398,639 56,401,678 CopyNumber #125 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.