OR5AP2 Olfactory Receptor
Gene Symbol | OR5AP21 (View this gene in GeneCards) |
Family | 5 |
Subfamily | AP |
Pseudogene | No |
CORP pseudogene probability score | 0.41 (functional) |
Aliases | OR11-146, HsOR11.11.84, ORL3401 |
External Ids | HGNC: 15258 GeneBank: AB065854, BK004594, NM_001002925 ORDB: ORL3401 |
Build #39 labels | OR5AP2 |
Chromosomal location | 11:56,641,492-56,642,442 (-) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR5AP1P | 64.9% | 302 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR5AP1 | 69% | 300 |
Mouse | Or5ap2 | 86% | 317 |
Rat | Or5ap2 | 84% | 317 |
Rat | Or5ap2b | 81% | 317 |
Cow | OR5AP2P | 82% | 313 |
Orang | OR9S18 | 55% | 303 |
Horse | OR5AP2C | 88% | 317 |
Chimp | OR5W2 | 58% | 304 |
Expression evidences
Source | Accession |
---|---|
ESTs | BX279705 |
mRNA | BC136990 |
GNF Atlas2 | gnf1h05766_at |
Sequence information
Nucleotide sequence |
ATGATGAGACTTATGAAAGAGGTTCGAGGCAGAAATCAAACAGAAGTAACAGAATTTCTC CTCTTAGGACTTTCCGACAATCCAGATCTACAAGGAGTCCTCTTTGCATTGTTTCTGTTG ATCTATATGGCAAACATGGTGGGCAATTTGGGGATGATTGTATTGATTAAGATTGATCTC TGTCTCCACACCCCCATGTATTTCTTTCTCAGTAGCCTCTCTTTTGTAGATGCCTCTTAC TCTTCTTCCGTCACTCCCAAGATGCTGGTGAACCTCATGGCTGAGAATAAGGCCATTTCT TTTCATGGATGTGCTGCCCAGTTCTACTTCTTTGGCTCCTTCCTGGGGACTGAGTGCTTC CTGTTGGCCATGATGGCATATGACCGCTATGCAGCCATTTGGAACCCCCTGCTCTACCCA GTTCTCGTGTCTGGGAGAATTTGCTTTTTGCTAATAGCTACCTCCTTCTTAGCAGGTTGT GGAAATGCAGCCATACATACAGGGATGACTTTTAGGTTGTCCTTTTGTGGTTCTAATAGG ATCAACCATTTCTACTGTGACACCCCGCCACTGCTCAAACTCTCTTGCTCTGATACCCAC TTCAATGGCATTGTGATCATGGCATTCTCAAGTTTTATTGTCATCAGCTGTGTTATGATT GTCCTCATTTCCTACCTGTGTATCTTCATTGCCGTCTTGAAGATGCCTTCGTTAGAGGGC AGGCACAAAGCCTTCTCCACCTGTGCCTCTTACCTCATGGCTGTCACCATATTCTTTGGA ACAATCCTCTTCATGTACTTGCGCCCTACATCTAGCTACTCAATGGAGCAAGACAAGGTT GTCTCTGTCTTTTATACAGTAATAATCCCTGTGCTAAATCCCCTCATCTATAGTTTAAAA AATAAGGATGTAAAAAAGGCCCTAAAGAAGATCTTATGGAAACACATCTTG |
Conceptual translation |
MMRLMKEVRGRNQTEVTEFLLLGLSDNPDLQGVLFALFLLIYMANMVGNLGMIVLIKIDL CLHTPMYFFLSSLSFVDASYSSSVTPKMLVNLMAENKAISFHGCAAQFYFFGSFLGTECF LLAMMAYDRYAAIWNPLLYPVLVSGRICFLLIATSFLAGCGNAAIHTGMTFRLSFCGSNR INHFYCDTPPLLKLSCSDTHFNGIVIMAFSSFIVISCVMIVLISYLCIFIAVLKMPSLEG RHKAFSTCASYLMAVTIFFGTILFMYLRPTSSYSMEQDKVVSVFYTVIIPVLNPLIYSLK NKDVKKALKKILWKHIL Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 56,409,010 | 56,409,010 | NS | A/T | D/E | rs61747872 (DbSNP) |
11 | 56,409,603 | 56,409,603 | NS | C/T | A/T | rs11606499 (DbSNP) |
11 | 56,409,599 | 56,409,599 | NS | T/C | Q/R | rs61732328 (DbSNP) |
11 | 56,409,533 | 56,409,533 | NS | T/C | H/R | rs61743175 (DbSNP) |
11 | 56,409,039 | 56,409,039 | NS | T/G | T/P | rs61742762 (DbSNP) |
11 | 56,641,534 | 56,641,534 | NS | A/T | D/E | 1000GP (CEU) |
11 | 56,642,127 | 56,642,127 | NS | C/T | A/T | 1000GP (CEU) |
11 | 100 | -100 | NS | C/T | R/H | 1000GP (YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
D302E | R128H | Q106R | A105T | % Freq | CORP | |
---|---|---|---|---|---|---|
1 | D | R | Q | A | 82.49 | 1.000 |
2 | D | R | Q | T | 13.44 | 1.000 |
3 | E | R | Q | A | 3.00 | 1.000 |
4 | D | R | R | A | 0.61 | 1.000 |
5 | D | H | Q | A | 0.46 | 1.000 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR5AP2.aApr07-unspliced | main_exon | 3UTR | chr11 | 56,641,489 | 56,641,492 | - |
CDS_partial | chr11 | 56,641,492 | 56,642,439 | - |