OR5AP1P Olfactory Receptor
| Gene Symbol | OR5AP1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | AP |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-205, HsOR11.11.83P, ORL3560 |
| External Ids | HGNC: 15257 GeneBank: AB065741, BK004602, NG_004209 ORDB: ORL3560 |
| Build #39 labels | OR5AP1P |
| Chromosomal location | 11:56,633,163-56,634,102 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5AP2 | 64.9% | 302 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5AP1 | 85% | 309 |
| Mouse | Or5ap2 | 68% | 302 |
| Rat | Or5ap2 | 68% | 305 |
| Cow | OR5AP9P | 72% | 311 |
| Orang | OR5B1P | 57% | 304 |
| Horse | OR5AP1 | 82% | 309 |
| Chimp | OR5AP2 | 66% | 302 |
Sequence information
| Nucleotide sequence |
ATGAGAAACTTTACACCACTGTCTGGATTTATTATCCTGGGATTCACGGATCACCCAGAA TTACAGTGTCTTCTTTTTGTGTTGTTTCTTCTCATCTATATGTTCACCGTTGTTGGAAAT CTTGGCATGATTCTATTAATCAAGATTGACTCACATCTCCATACTCCAATGTACTTTTTC CTCAGTAACTTGTGCCTTGTTGACTTCTGTTATTCTTCTGTCATTGCCCCTAATATGCTG ATAAATTTCTGGGTGGAGAACCCAGTCATTTCATTTAATGAATGTGCCACTCAATTCTTC TTTTTTGGCTCCTTTGCTGGCATTGAGGGTTTTCTGTTGGCTGTCATGGCCTATGACTGT TATGTGGCCATCTGCAAGCCTCTGCTTTATACAGTCCTGATGTCACCCCACCTCAGTGCC CTCCTGGTGTTAGCCACATATCTTTTGGGCTTTGTAAATGCTGCCATTCACACTGGCTTC ACCTTCCAGCTGTCATTCTGCCACTCCAATATCATTAACTATTTTTTTTGTGATATTCCA CCCCTCCTGAAACTCTTGTTCTGATACACACATCAATGAGGTTGTCATTTTTGCCTTTGC CAGTTTTAATGAATTGAGCTGTCTCCTACTGATTCTTGTTTCCTGTCTCTACATCCTTGC TGCCATCTTGAAGATCCACTCTGCAGAAGGGAGGCACAAGGCCTTCTCCACCTGTGCTTC CCACTTGGCGGTGGTCACTATCTTCTTTGGGACAATCCTGTTCATGTATCTCTGCGTCCC AGCTCCAGCTACTCAATGGATCAAGACAAAGTGGTGTCTGTCTTACACAGTAGTCATCCC CATGTTGAATCCTTTCATCTATAGTTTGAGAAACAAGGAAGTCAAAGCTTCTTTAAGTAA AATGTTTAAAACAGTCTCTTATATCTCTACTTAGAATCAT |
| Conceptual translation |
MRNFTPLSGFIILGFTDHPELQCLLFVLFLLIYMFTVVGNLGMILLIKIDSHLHTPMYFF LSNLCLVDFCYSSVIAPNMLINFWVENPVISFNECATQFFFFGSFAGIEGFLLAVMAYDC YVAICKPLLYTVLMSPHLSALLVLATYLLGFVNAAIHTGFTFQLSFCHSNIINYFFCDIP PLLKL\SDTHINEVVIFAFASFNELSCLLLILVSCLYILAAILKIHSAEGRHKAFSTCA SHLAVVTIFFGTILFM/SLRPSSSYSMDQDKVVSV//TVVIPMLNPFIYSLRNKEVK ASLSKMFKTVSYISTXH Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,401,219 | 56,401,219 | SNP | A/G | rs61903306 (DbSNP) | |
| 11 | 56,401,476 | 56,401,476 | SNP | A/T | rs17548679 (DbSNP) | |
| 11 | 56,633,565 | 56,633,565 | SNP | G/A | 1000GP (CEU) | |
| 11 | 56,633,743 | 56,633,743 | SNP | A/G | 1000GP (CEU) | |
| 11 | 56,634,000 | 56,634,000 | SNP | A/T | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 56,398,639 | 56,401,678 | CopyNumber | #125 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.