OR5B1P Olfactory Receptor
| Gene Symbol | OR5B1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR8-122, OR8-123, OR912-92, OR3-144, OR11-242, OR6-55, OR6-57, HsOR11.12.18P, ORL3209 |
| External Ids | HGNC: 8322 GeneBank: AF399501, BK004806, NG_002305, U86263, U86276, U86277, U86284, U86299 ORDB: ORL3209 |
| Build #39 labels | OR5B5P, OR5B1P, OR5B14P, OR5B7P |
| Chromosomal location | 11:58,365,830-58,366,763 (-) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5B17 | 72.58% | 310 |
| OR5B2 | 75.9% | 307 |
| OR5B3 | 80.65% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5B2B | 83% | 309 |
| Mouse | Or5b3 | 77% | 307 |
| Rat | Or5b95 | 76% | 310 |
| Cow | OR5B141 | 76% | 310 |
| Orang | OR5B3P | 79% | 310 |
| Horse | OR5B157 | 81% | 310 |
| Horse | OR5B3 | 80% | 312 |
| Horse | OR5B158 | 81% | 310 |
| Chimp | OR5B3 | 81% | 310 |
Sequence information
| Nucleotide sequence |
ATGAAGAACTGTACAGAAGTGACAGAGTTCATCCTCCTGGGACTAACCAATGCTCCAGAG CTACAAGTCCCCCTCCTTATCATGTTCACTCTCATATACCTTGTCAATGTGGTTGGAAAC CTGGGGATGATTGTTTTAATTGTTTGGGACATTCATCTCCACACTCCCATGTATTTTTTC CTCAGTCACCTGTCTCTAGTGGACTTTTGTTACTCTTCAGCTGTCACTCCCACAGTCATA GCTGGGCTCGTTATAGGAGACAAGGTCATCTCTTACAATGCATGTGCTGCTCAAATGTTC TTTTTTGCAGCCTTTGCCACTGTGGAAAATTTCCTCTTGGCCTCAATGGCCTATGACCGC TATGATGCAGTGTGCAAACCCCTACATTACACCACCACCATGACAACAAGTGTGTGTGCA TGTCTGGCTATAATCTGTTATGTCTGTGGTTTCTTGAATGCCTCCATACACATTGGGGAA ACATTGTCTCTCTTTCTGTATGTCCAATGAAGTCCATTGCTTTTTCTGTGATGTTCCACC AGTCATGGCTCTGTCTTGCTGTGATAGACATGTGAATGAGCTAGTTCTCATTTATGTAGC CAGTTTCAATATCTTTTCTGCCATCCTAGTTATCTTGATCTCCTACCTATTCATATTTAT CACCATCCTAAAGATGCACTCAGCTTCAGGATACCAGAAGGCTTTGTCCACCTGTGCCTC CCACCTCACTGCAGTCATCATCTTCTATGGGACTATTATCTTCATGTACTTACAGCCCAG CTCTGGTCACTCCATGGACACAGACAAACTGGCATCTGTGTTCTATACTATGATCATCCC CATGCTGAACCCCCTGGTCTATAGCCTGAGGAACAACGAAGTGAAGAGCGCATTCAAGAA AGTTATTGAGAAGGCAAAATTGTCTCTATTATTG |
| Conceptual translation |
MKNCTEVTEFILLGLTNAPELQVPLLIMFTLIYLVNVVGNLGMIVLIVWDIHLHTPMYFF LSHLSLVDFCYSSAVTPTVIAGLVIGDKVISYNACAAQMFFFAAFATVENFLLASMAYDR YDAVCKPLHYTTTMTTSVCACLAIICYVCGFLNASIHIGET//LSFCMSNEVHCFFCD VPPVMALSCCDRHVNELVLIYVASFNIFSAILVILISYLFIFITILKMHSASGYQKALST CASHLTAVIIFYGTIIFMYLQPSSGHSMDTDKLASVFYTMIIPMLNPLVYSLRNNEVKSA FKKVIEKAKLSLLL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/G | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 11 | 58,133,459 | 58,133,458 | Ins(1) | -/G | rs34391799 (DbSNP) | |
| 11 | 58,133,611 | 58,133,611 | SNP | G/T | rs57282455 (DbSNP) | |
| 11 | 58,133,738 | 58,133,738 | SNP | A/T | rs11601791 (DbSNP) | |
| 11 | 58,134,150 | 58,134,150 | SNP | C/G | rs12283305 (DbSNP) | |
| 11 | 58,365,896 | 58,365,896 | SNP | C/G | 1000GP (CEU) | |
| 11 | 58,366,265 | 58,366,265 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 11 | 58,366,617 | 58,366,617 | SNP | C/T | 1000GP (CEU) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.