OR5BJ1P Olfactory Receptor
| Gene Symbol | OR5BJ1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | BJ |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR12.3.4P, ORL4082 |
| External Ids | HGNC: 15434 GeneBank: NG_004156 ORDB: ORL4082 |
| Build #39 labels | OR5BJ1P |
| Chromosomal location | 12:48,394,483-48,395,386 (-) |
| Cluster | 12@49b |
| Synteny | CLIC#30 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5BK1P | 51.95% | 231 |
| OR8S1 | 46.46% | 297 |
| OR8T1P | 46.2% | 303 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8BJ3P | 76% | 303 |
| Mouse | Or8s10 | 47% | 302 |
| Rat | Or8s16 | 46% | 305 |
| Cow | OR5BJ3P | 66% | 303 |
| Orang | OR5BK2P | 52% | 291 |
| Horse | OR5BJ4 | 64% | 303 |
| Chimp | OR5BJ2P | 87% | 199 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DA411728 |
Sequence information
| Nucleotide sequence |
ATGAAAAATCTCATCATCATTACTGAGTTCGTCCTTATGGAATCATCTAGAAATCCTCAG ATCCAGACCATGACCTGTATGCTCCTGGTGATTTATCTGTTGTCACTGATGGAGAACCTG ATGATGATCCTGGTGATCAGGACCAATTCCCACCTTAAAACAACCATGTACTTCTTTCTG GGTCACCTGTCACTGTTAGATCTCTGCCTTCCTTCAATCCCTGTGCCCAAGATGCTGCAG AATTTATTAACTCAAAGGTAAACCATCTCTATGTGGTACTGCATTGTCCAGAGTTTCTTT CTCATATTCTCTGGGAGCACAGAAGCCTGCCTACTCCTTGCCATGGCCTGTGATCACTCT ACTTCCAACTGCCACCCTCGGCTCAACGATGTGGTTATGAATCAGCCTGTCTGTGTCAGG ATGGTGATTGCAGCATGGGCAGTGGGATTCCTAAACTCCTTGACAAAGAATCTTTTCATT TACAACTTACACTTCTGTGGCCCCAGTGTCATCCCTCACTTCTGCTGTGAGCTGCCTTCA CTCTTCCCTCTCTCTTGTATTGATCCAGCTGCCAGTGAGGTCCTTCCTGCTGGGTCATGT ACATTGCTAGGATTTGTGACTTGCCGCTGGTCCTCTTTTCTTACTCTAACACCATCTCTG CCTCCTAGCCATTTGTTTTTCTGAGGGTCAAGGCAAAGCCTTCTCCACCTGCTCCTCCCA CCTCACCGTGGTGCTTTTGTACTATGGTAAGGTTTTATTAAGGTACACGACCCCTCTCTT AGGTTCCATCTTGGAGCAAGTGGTCTGCATTCAGTACAGTGTGATCACATCTTCACTGAA GCCACTCATCTGCAGCCTCAAGAACCAGGAGGTGAAGACAGCTCTGTGTAAAATGTTGAA GCAG |
| Conceptual translation |
MKNLIIITEFVLMESSRNPQIQTMTCMLLVIYLLSLMENLMMILVIRTNSHLKTTMYFFL GHLSLLDLCLPSIPVPKMLQNLLTQRXISMWYCIVQSFFLIFSGSTEACLLLAMACDHS TSNCHPRLNDVVMNQPVCVRMVIAAWAVGFLNSLTKNLFIYNLHFCGPSVIPHFCCELPS LFPLSCIDPAASEVLPAGSCTLLGFVTCR/VLFSYSNTISA/LAICFSEGQGKAFSTC SSHLTVVLLYYGKVLLRYTTPLLGSILEQVVCIQYSVITSSLKPLICSLKNQEVKTALCK MLKQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 12 | 48,394,522 | 48,394,522 | SNP | G/T | 1000GP (CEU) | |
| 12 | 48,394,745 | 48,394,745 | SNP | A/G | 1000GP (CEU) | |
| 12 | 48,395,194 | 48,395,194 | SNP | G/A | 1000GP (CEU) | |
| 12 | 48,788,387 | 48,788,387 | Del(1) | -/C | rs34857875 (DbSNP) | |
| 12 | 48,788,528 | 48,788,528 | SNP | A/G | rs55709943 (DbSNP) | |
| 12 | 48,788,977 | 48,788,977 | SNP | A/G | rs12298871 (DbSNP) | |
| 12 | 48,789,003 | 48,789,003 | SNP | A/G | rs11834568 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 189 (Hasin) | |||
| 12 | 48,429,702 | 48,825,499 | CopyNumber | Variation_3888 (DGV) |
| 12 | 48,786,266 | 48,789,269 | CopyNumber | #86 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.