OR5BK1P Olfactory Receptor
| Gene Symbol | OR5BK1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | BK |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR12.3.2P, ORL3665 |
| External Ids | HGNC: 14817 GeneBank: NG_004391 ORDB: ORL3665 |
| Build #39 labels | OR5BK1P |
| Chromosomal location | 12:48,355,659-48,356,545 (-) |
| Cluster | 12@49b |
| Synteny | CLIC#30 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5BJ1P | 51.95% | 231 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8BJ4 | 73% | 234 |
| Mouse | Or8s2 | 41% | 284 |
| Rat | Or8s10 | 49% | 234 |
| Cow | OR8BJ4P | 72% | 234 |
| Orang | OR5BK2P | 84% | 233 |
| Orang | OR5BK3P | 82% | 179 |
| Horse | OR5BJ5P | 71% | 234 |
| Chimp | OR5BK2P | 97% | 233 |
Sequence information
| Nucleotide sequence |
ATGCTCTTTGTGCTAATCCTGGTGATTCATCTCCTGACTTTGACGGGGAAGCTGGTGATG ATCCTGGAGATCAGGGCTGATTCTCACCTTCAAAGACCCATGTACTTCTTCCTTTGACAT CTGTCCTTTCTGGATCTCAGCTACTCCTAGTTACTGTGCCCAGGATGCTACAAAATTTCC TCTCAGAAGAAAAGCATCTCAATGTGGGGCTGCCTCACCAAGTTTCTTTTTCACTCTCTC TGGGGGAACGGAAGCCTGTCTGTTCTCTGCCATGGCCTATGATCACTATGCTACCATCCG CCACCCTGTGGTCTATACCATGGTCATGAACAGATCTCTCTGTATGGTGATTTTGAGAAT TGCTTGGGCAGCGGGATTTCTGATTTCCTTGATGGACAGTCTTTTCACCCACAAGTTACA TTTCTGTGGGCCTGACATCATCCTTATTTCAGGTGTAAGCTGCCTCCATTCTTCCCTCTG TCCTACATTGATCCCACTGTCAATGAGATTCTTCTAGCTGTGTCACAGGCATTCTGGGGG CTACTGACACTTTCCCTAATCTTCTTCTCTTACTCTAGAATCACATCTGTCATACTGAGC ATCTGCTCCTCTGAGGGCCAAGGCAAAGCCTTCTCCGCATGCCCTTCTCATCTCGCTGTG GTTCTCTCATTCTATGGGACAGCTTTTTTCAGATACCCAGGCTCTACTTCAGGTTCGGTG TTGGGGCAAGTGGTCTCTGTTCAGTATAGTGAACTCTCTTTTCTCCTTGCTGCTTCAAGT ACCATTTTCATCCTTCCTCTCTAAATAATGTCCAGCTGCATTGAAGCACATGTCATCAAA CTATTCCACACACACTCCTCCTTGTTATTATTACCTACCACACTCCT |
| Conceptual translation |
MLFVLILVIHLLTLTGKLVMILEIRADSHLQRPMYFFLXLSFLDLSYS/VTVPRMLQN FLSE\SISMWGCLTKFLFH/SL/GTEACLFSAMAYDHYATIRHPVVYTMVMNRSLCM VILRIAWAAGFLISLMDSLFTHKLHFCGPDIIL/FRCKLPPFFPLSYIDPTVNEILLAV SQAFWGLLTLSLIFFSYSRITSVILSICSSEGQGKAFSACPSHLAVVLSFYGTAFFRY/ RLYFRFGVGASGLCSVXTLFSP/LLQVPFSSFLSKXPAALKHMSSNYSTH\LLVII TYHTP Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI) | |
| 12 | 48,355,671 | 48,355,671 | SNP | G/A | 1000GP (CEU) | |
| 12 | 48,749,582 | 48,749,582 | SNP | G/A | rs1489112 (DbSNP) | |
| 12 | 48,750,147 | 48,750,147 | SNP | A/G | rs58607953 (DbSNP) | |
| 12 | 48,750,256 | 48,750,256 | SNP | C/T | rs74087202 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 209 (Hasin) | |||
| 12 | 48,429,702 | 48,825,499 | CopyNumber | Variation_3888 (DGV) |
| 12 | 48,537,505 | 48,758,024 | CopyNumber | Variation_30600 (DGV) |
| 12 | 48,541,757 | 48,779,562 | CopyNumber | Variation_8729 (DGV) |
| 12 | 48,547,128 | 48,779,562 | CopyNumber | Variation_2983 (DGV) |
| 12 | 48,747,442 | 48,750,428 | CopyNumber | #148 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.