OR5BS1P Olfactory Receptor
| Gene Symbol | OR5BS1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | BS |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR12.3.7P |
| External Ids | HGNC: 19627 GeneBank: NG_004343 |
| Build #39 labels | OR5BS1 |
| Chromosomal location | 12:48,559,882-48,560,814 (+) |
| Cluster | 12@49b |
| Synteny | CLIC#30 |
| Remarks | Disrupted by MIR repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5A2 | 47.27% | 256 |
| OR8S1 | 49.81% | 261 |
| OR8T1P | 52.53% | 257 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5BS3P | 79% | 261 |
| Mouse | Or5bs2-ps | 76% | 255 |
| Rat | Or5bs2-ps | 75% | 255 |
| Cow | OR5BS1BP | 81% | 264 |
| Cow | OR5BS1 | 81% | 264 |
| Orang | OR8S1 | 46% | 312 |
| Horse | OR5BS6P | 81% | 259 |
| Chimp | OR8S2P | 53% | 257 |
Sequence information
| Nucleotide sequence |
ATGGAAGTCAGCAACATGACCACAGTCACTGTGTTTATTCTCCTAGGACTGTCCAACAAC CCTCAGGTTCAGGCACTGCTCTTTGTTCTGTTCCTGGTGATTTACCTCTTGACTCTACTG GGGAACCTGCTGATGGTGCTGGTGATCAGTACTGATTCCCACCTCTGCACCCCTATGTAC TTCTTCCTGAGACAACTCTCCTTCCTGGATGCTTTCTATTCCTCAATTATTGTGCCTAAA CTGCTAGAGAACCTTCTTTCTAAGGGGGAGACAATATCCTTCCTTGAGTGTTTCACTCAG ATCTCCCTGGTCATATTTTCTGGAGCTACTGAGGCTTGCCTCCTCTCGGTCATGGCCTAT GACCGGTTTCAGGCCATGTGTCATCCACTGTTGTATGTGGTGATTATAAACAGGAGGGTG TGTGCTGGCCTGGTGGGGGCATCCTGGGCCATAGGAATGGGGACTGGCCTAATTAACACC CTCCTCCTGGCTCAGCAGCACTTCTGCGGCCCTAATGTCATCCACAGTTTTGCCTGCGAG CTTCCTCCGGTGCTCTTATTGACCTGTTCTGACCCCTGCGCTAGCATCGTCTCCATTCTC ACTACCATGTCAGTCCTGGGCCTTGGCACCCTTGTCCTTTTGCTGGGTTCCTACAGCTGT ATCATCATGACAGCCCTGAGGATCAACTCTGCTACAGGTCGGAGCAAGATCTTTTCCACC TGCTCTTCCCATTTCCTTGTGGTCACCATCTTTTATACTTCAGGAGTTCTCAGGTATGTC ATACTATACCCCTGAATATAAATGCGGGATATTCCTTACCCTAAGTGGTCTCCGTTGGCA GAAGAGAGCATTACAAAATAGCAGGACATTCAAAAGGCCTAGGCTCTAGTGCTGGCTCTA CCATGGACTAGCTGTATGAATTGTAAAGAATCT |
| Conceptual translation |
MEVSNMTTVTVFILLGLSNNPQVQALLFVLFLVIYLLTLLGNLLMVLVISTDSHLCTPMY FFLRQLSFLDAFYSSIIVPKLLENLLSKGETISFLECFTQISLVIFSGATEACLLSVMAY DRFQAMCHPLLYVVIINRRVCAGLVGASWAIGMGTGLINTLLLAQQHFCGPNVIHSFACE LPPVLLLTCSDPCASIVSILTTMSVLGLGTLVLLLGSYSCIIMTALRINSATGRSKIFST CSSHFLVVTIFYTSGVLRYVILYPXXRDIPYPKWSPLAEESITKXDIQKAXLVLAL PWTSCMNCKES Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI) | |
| 12 | 48,559,899 | 48,559,899 | SNP | G/A | 1000GP (CEU) | |
| 12 | 48,560,149 | 48,560,149 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 12 | 48,560,247 | 48,560,247 | SNP | G/A | 1000GP (CEU) | |
| 12 | 48,560,257 | 48,560,257 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 12 | 48,560,392 | 48,560,392 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 12 | 48,560,430 | 48,560,430 | SNP | G/A | 1000GP (CHBJPT) | |
| 12 | 48,560,442 | 48,560,442 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 12 | 48,560,713 | 48,560,713 | SNP | C/T | 1000GP (CEU) | |
| 12 | 48,953,682 | 48,953,682 | SNP | A/G | rs11168639 (DbSNP) | |
| 12 | 48,953,819 | 48,953,819 | SNP | A/T | rs61910742 (DbSNP) | |
| 12 | 48,953,932 | 48,953,932 | SNP | A/G | rs17237198 (DbSNP) | |
| 12 | 48,954,003 | 48,954,003 | Del(1) | -/C | rs35759509 (DbSNP) | |
| 12 | 48,954,004 | 48,954,004 | Del(1) | -/C | rs5798080 (DbSNP) | |
| 12 | 48,954,030 | 48,954,030 | SNP | A/G | rs61995742 (DbSNP) | |
| 12 | 48,954,040 | 48,954,040 | SNP | G/A | rs1807757 (DbSNP) | |
| 12 | 48,954,175 | 48,954,175 | SNP | C/T | rs17834022 (DbSNP) | |
| 12 | 48,954,225 | 48,954,225 | SNP | C/G | rs7312017 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.