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(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR5D3P Olfactory Receptor

Gene Symbol OR5D3P1 (View this gene in GeneCards)
Family 5
Subfamily D
Pseudogene Yes
CORP pseudogene probability score 0.07 (functional)
Aliases OR11-8b, OR11-8c, OR5D3, OR5D4, OR11-140, HsOR11.11.23P, ORL3530
External Ids HGNC: 8336   GeneBank: AF065860, AF065861, AF399364, BK004331, NG_002172   ORDB: ORL3530   
Build #39 labels OR5D3P
Chromosomal location 11:55,726,199-55,727,155 (+)
Cluster 11@56
Synteny CLIC#26
Remarks Full ORF without a suitable ATG

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR5D2P 85.67% 314

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR5D3 87% 290
Mouse Or5d3-ps 82% 310
Rat Or5d45-ps 76% 308
Cow OR5D95P 79% 312
Orang OR8D4 51% 306
Horse OR5D2 83% 316
Horse OR5D3BP 80% 311
Horse OR5D3CP 80% 311
Chimp OR5D3 97% 290

Sequence information

Nucleotide sequence TTATTTTTTTCTCACAGGATTCAAAAAAATCAGACTGCTGGAGTCACCTTCATCCTCTTG
GGCTTCTCAGAATTTCCAGACCTTCAGATACCCCTGTTCCTGGTCTTCCTGACCATCTAC
ACAATCACTGTGATGGGGAATCTGGGCATGATCATGGTCATCAGGATCAACCCCAAACTC
CACACCCCTATGTACTTTTTCCTCAGCCACTTGTCCTTTGTTGATTTCTGTTATTCCACC
ACAATTACACCAAAACTGCTGGAGAACTTGGTTGTGGAAGACAGAATCATCTCCTTCACA
GGATGCATCATGCAATTCTTCTTTGCCTGTATATTTGTGGTGACAGAAACATTCATGCTG
GCAGCGATGGCTTATGACAGATTTGTGGCAGTGTGTAACCCTCTGCTTTACACAGTTGCA
ATGTCCCAGAGGCTTTGCTCCTTGTTAGTGGCTGCATCATACTCTTGGAGTTTAGTTTGT
TCCTTAACATACACATATTTTCTGTTGACTTTATCTTTTTGTAGGACTAACTTCATTAAT
AACTTTGTCTGTGAGCACGCTGCCATTGTTGCTGTGTCCTGCTCTGACCCCTACATGAGC
CAGAAGGTCATTTTAGTTTCTGCAACATTCAATGAAATAAGCAGCCTGGTGATCATTCTC
ACTTCCTATGCTTTCATTTTTATCACTGTCATGAAGATGCCTTCCACTGGGGGGCGCAAG
AAAGCGTTCTCCACGTGTGCCTCCCACCTGACCGCCATTACCATTTTCCATGGGACTATC
CTTTTTCTCTACTGTGTTCCTAACTCCAAAAGTTCATGGCTCATGGTCAAGGTGGCCTCT
GTCTTTTACACAGTGGTCATTCCCATGCTGAACCCCTTGATCTATAGCCTCAGGAACAAA
GATGTAAAAGAGACAGTCAGGAAGTTAGTCATTACCAAATTATTATGTCATAAAATG
Conceptual translation LFFSHRIQKNQTAGVTFILLGFSEFPDLQIPLFLVFLTIYTITVMGNLGMIMVIRINPKL
HTPMYFFLSHLSFVDFCYSTTITPKLLENLVVEDRIISFTGCIMQFFFACIFVVTETFML
AAMAYDRFVAVCNPLLYTVAMSQRLCSLLVAASYSWSLVCSLTYTYFLLTLSFCRTNFIN
NFVCEHAAIVAVSCSDPYMSQKVILVSATFNEISSLVIILTSYAFIFITVMKMPSTGGRK
KAFSTCASHLTAITIFHGTILFLYCVPNSKSSWLMVKVASVFYTVVIPMLNPLIYSLRNK
DVKETVRKLVITKLLCHKM

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 55,494,114 55,494,113 Ins(1) -/C rs36019018 (DbSNP)
11 55,493,764 55,493,764 SNP A/G rs10897175 (DbSNP)
11 55,493,839 55,493,839 SNP A/G rs12285202 (DbSNP)
11 55,493,748 55,493,748 SNP A/T rs11230788 (DbSNP)
11 55,494,320 55,494,320 SNP C/G rs2612706 (DbSNP)
11 55,494,403 55,494,403 SNP C/T rs34232406 (DbSNP)
11 55,493,961 55,493,961 SNP C/T rs11230791 (DbSNP)
11 55,494,194 55,494,194 SNP C/T rs12098871 (DbSNP)
11 55,493,965 55,493,965 SNP C/T rs12291767 (DbSNP)
11 55,493,863 55,493,863 SNP C/T rs11230789 (DbSNP)
11 55,494,172 55,494,172 SNP T/C rs1023921 (DbSNP)
11 55,726,272 55,726,272 SNP T/A 1000GP (CEU, CHBJPT)
11 55,726,288 55,726,288 SNP A/G 1000GP (CEU, CHBJPT)
11 55,726,387 55,726,387 SNP T/C 1000GP (CEU, CHBJPT)
11 55,726,485 55,726,485 SNP T/C 1000GP (CEU, CHBJPT)
11 55,726,696 55,726,696 SNP T/C 1000GP (CEU, CHBJPT)
11 55,726,718 55,726,718 SNP T/C 1000GP (CEU, CHBJPT)
11 55,726,927 55,726,927 SNP C/T 1000GP (CEU, CHBJPT)
11 100 -100 SNP T/A 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
11 55,153,930 55,816,828 CopyNumber Variation_0308 (DGV)
11 55,475,356 55,563,900 CopyNumber Variation_1244 (DGV)
11 55,446,295 55,618,623 CopyNumber Variation_2167 (DGV)
11 55,339,702 55,638,112 CopyNumber Variation_2926 (DGV)
11 55,222,420 55,621,884 CopyNumber Variation_3852 (DGV)
11 55,382,681 55,548,038 CopyNumber Variation_4743 (DGV)
11 54,835,623 55,879,426 CopyNumber Variation_8690 (DGV)
11 55,445,294 55,620,699 CopyNumber Variation_9187 (DGV)
11 55,377,006 55,620,699 CopyNumber Variation_9188 (DGV)
11 55,422,586 55,596,313 CopyNumber Variation_10360 (DGV)
11 55,422,585 55,596,313 CopyNumber Variation_29911 (DGV)
11 55,432,955 55,495,323 Inversion Variation_37124 (DGV)
11 55,460,683 55,547,092 CopyNumber Variation_38236 (DGV)
11 55,463,782 55,584,109 CopyNumber Variation_48056 (DGV)
11 55,437,126 55,596,313 CopyNumber Variation_48840 (DGV)
11 55,442,368 55,596,313 CopyNumber Variation_48841 (DGV)
11 55,444,868 55,591,047 CopyNumber Variation_48842 (DGV)
11 55,444,868 55,596,313 CopyNumber Variation_48843 (DGV)
11 55,447,427 55,596,313 CopyNumber Variation_53429 (DGV)
11 55,422,345 55,603,590 CopyNumber Variation_65956 (DGV)
11 55,422,701 55,509,962 CopyNumber Variation_85778 (DGV)
CopyNumber 46 (Hasin)
11 55,493,575 55,496,631 Deletion #275 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

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