OR5H8P Olfactory Receptor
| Gene Symbol | OR5H8P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | H |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR3-7, HsOR3.3.13P, ORL3101 |
| External Ids | HGNC: 14773 GeneBank: AB065460, AY284069-AY284100, BK004590, NG_002227 ORDB: ORL3101 |
| Build #39 labels | OR5H8P |
| Chromosomal location | 3:98,311,913-98,312,840 (+) |
| Cluster | 3@98 |
| Synteny | CLIC#9 |
| Remarks | Segregating Pseudo Gene, a polymorphism of 1 bp insertion (A) at position 687 |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5H1 | 83.5% | 309 |
| OR5H15 | 81.55% | 309 |
| OR5H2 | 81.55% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5H13 | 79% | 308 |
| Mouse | Or5h26 | 80% | 308 |
| Rat | Or5h26 | 80% | 308 |
| Cow | OR5H30 | 80% | 306 |
| Orang | OR5H8 | 90% | 309 |
| Horse | OR5H8 | 80% | 309 |
| Horse | OR5H40 | 80% | 309 |
| Chimp | OR5H8 | 98% | 309 |
Sequence information
| Nucleotide sequence |
ATGGATGACGAAAATGCAACATTGCTGACAGAGTTTGTTCTCACAGGACTTACATATCAA TCAGAGTGGAAAATACCCCTGTTCCTGGCATTCTTGGTAATATATCTCATCACCATCATG GCAAATCTTGGTCTGATTGCTGTCATCTGGAAAGACTCACACCTTCACATTCCAATGTAC TTATTCCTTGGGAGTTTAGCCTTTGTGGATGCTTGGTTATCATCCTCAGTGACCCCTAAG ATGCTGATCAGCTTTTTAGCTAAGAGTATGATTATTTCTGTCTCTGAATGCAAGATACAA TTTTTTTCCTTTGGAATCAGTGGAACCACAGAATGTTTTCTCTTGGCAACAATGGCATAT GATCGCTATGTAGCCATATGCAAACCTTTACTTTATCCAGTCATTATGACCAATGGACTG TGTATCTGGCTATTAGTCTTGTCATTTATAGGTGGCTTTCTTCATGCCTTAATTCATGAA GGTATTTTATTCAGATTAACCTTCTGTAATTCCAACATAATACATCACTTTTACTGTGAC ATTATCCCATTGTTAAAGATTTCCTGTACTGACCCTTCTATTAATTTTTTAATGCTTTTT ATTTTGTCTGGTTCAATACAGGTATTCACTATTTTGACTGTTCTTGTCTCTTATACATTT GTCCTCTTTACAATCTTAAAAAAAAAAGTCTGCCAAAGACATAAGGAAAGCCTTTTCCAC CTGTGGAGCCCATCTCTTATCTGTTTCTTTATACTATGGCCCCCTTCTCTTCATGTATGT GCACCCTGCATCTCCACAAGCAGATGATCAAGATATGGTGGAGTCTCTATTTTACACTGT CATAATTCCTTTCTTAAATCCCATTATCTACAGCCTGAGAAATAAGCAAGTCATAGATTC ACTGACAAAAACATTAAAAGGAAATGTT |
| Conceptual translation |
MDDENATLLTEFVLTGLTYQSEWKIPLFLAFLVIYLITIMANLGLIAVIWKDSHLHIPMY LFLGSLAFVDAWLSSSVTPKMLISFLAKSMIISVSECKIQFFSFGISGTTECFLLATMAY DRYVAICKPLLYPVIMTNGLCIWLLVLSFIGGFLHALIHEGILFRLTFCNSNIIHHFYCD IIPLLKISCTDPSINFLMLFILSGSIQVFTILTVLVSYTFVLFTILKKK\AKDIRKAFS TCGAHLLSVSLYYGPLLFMYVHPASPQADDQDMVESLFYTVIIPFLNPIIYSLRNKQVID SLTKTLKGNV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 3 | 98,031,574 | 98,031,579 | In-Del(6) | -/ATATGG | rs71113900 (DbSNP) | |
| 3 | 98,031,466 | 98,031,466 | SNP | A/G | rs13096400 (DbSNP) | |
| 3 | 98,031,113 | 98,031,113 | SNP | A/G | rs13076085 (DbSNP) | |
| 3 | 98,031,240 | 98,031,240 | SNP | A/T | rs73142978 (DbSNP) | |
| 3 | 98,031,307 | 98,031,307 | SNP | A/T | rs2316271 (DbSNP) | |
| 3 | 98,031,148 | 98,031,148 | SNP | A/T | rs4325958 (DbSNP) | |
| 3 | 98,031,572 | 98,031,572 | SNP | C/T | rs56177664 (DbSNP) | |
| 3 | 98,030,869 | 98,030,869 | SNP | C/T | rs62270683 (DbSNP) | |
| 3 | 98,031,183 | 98,031,183 | SNP | C/T | rs72937135 (DbSNP) | |
| 3 | 98,031,282 | 98,031,282 | SNP | C/T | rs58642779 (DbSNP) | |
| 3 | 98,031,315 | 98,031,315 | SNP | G/A | rs2316270 (DbSNP) | |
| 3 | 98,031,539 | 98,031,539 | SNP | G/A | rs2316268 (DbSNP) | |
| 3 | 98,031,378 | 98,031,378 | SNP | T/G | rs2316269 (DbSNP) | |
| 3 | 98,312,025 | 98,312,025 | SNP | C/T | 1000GP (CEU) | |
| 3 | 98,312,339 | 98,312,339 | SNP | T/C | 1000GP (CEU) | |
| 3 | 98,312,438 | 98,312,438 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 3 | 98,312,463 | 98,312,463 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 3 | 98,312,471 | 98,312,471 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 3 | 98,312,534 | 98,312,534 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 3 | 98,312,622 | 98,312,622 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 3 | 98,312,695 | 98,312,695 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 3 | 98,312,728 | 98,312,728 | SNP | T/C | 1000GP (CEU) | |
| 3 | 98,312,396 | 98,312,396 | SNP | A/T | 1000GP (CHBJPT) | |
| 3 | 98,312,403 | 98,312,403 | SNP | T/A | 1000GP (CHBJPT) | |
| 3 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR5H8P.aApr07 | main_exon | 5UTR | chr3 | 98,311,885 | 98,311,913 | + |
| CDS_partial | chr3 | 98,311,913 | 98,312,008 | + | ||
| exon_3UTR | chr3 | 98,457,695 | 98,457,891 | + | ||