OR5J7P Olfactory Receptor
Gene Symbol | OR5J7P1 (View this gene in GeneCards) |
Family | 5 |
Subfamily | J |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | HsOR11.11.50P |
External Ids | HGNC: 31289 GeneBank: NG_004428 |
Build #39 labels | |
Chromosomal location | 11:56,165,500-56,165,921 (+) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks | Disrupted by Line repeat |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR5J2 | 83.82% | 136 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR5J2B | 85% | 136 |
Dog | OR5J2 | 85% | 136 |
Mouse | Or5j3 | 79% | 140 |
Rat | Or5j1 | 77% | 137 |
Cow | OR5J2 | 81% | 140 |
Orang | OR9S18 | 60% | 129 |
Horse | OR5J2 | 80% | 140 |
Chimp | OR5J2 | 85% | 136 |
Sequence information
Nucleotide sequence |
GCATTTTTGCTGCATATTTCATTGATTATGTATCACTGCTAAAGCTGTCATGTTCTGACA CCTCCATGAATGAGTTGTTGCTGTTAACCTTCTCTGGAGTCATTGCCACGGCCACCTTCT TGATTGTGATCATTTCCTACATCTTCATTGCTTTTGCTATCCTAAGGATCTGCTCAGCAT CAGGCAGACAGAAAGCCTTCTCCACCTGTGCCTCTAACCTAACTGCTATGGCCATATTCT ACGGTACCTTAAGCTTTAGCTACATTCAGCCAAGCTCCCAGTATTCTGTGGAACAGGAGA AAGTAGTTTCTGTGTTCTATACACTAGTGATTCCCATGTTAAACCCATTGATATACAGTC TGAGAAACAAGGATGTAAAGCAGGCAGTGAAAAGAGCTATAGACATAAAACATTTCTCAT GT |
Conceptual translation |
IFAAYFIDYVSLLKLSCSDTSMNELLLLTFSGVIATATFLIVIISYIFIAFAILRICSAS GRQKAFSTCASNLTAMAIFYGTLSFSYIQPSSQYSVEQEKVVSVFYTLVIPMLNPLIYSL RNKDVKQAVKRAIDIKHFSC Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 100 | -100 | SNP | C/T | 1000GP (YRI) | |
11 | 55,933,084 | 55,933,084 | SNP | C/T | rs12282595 (DbSNP) | |
11 | 56,165,608 | 56,165,608 | SNP | C/T | 1000GP (CEU, CHBJPT) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
CopyNumber | 99 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.