OR5J7P Olfactory Receptor
| Gene Symbol | OR5J7P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | J |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.11.50P |
| External Ids | HGNC: 31289 GeneBank: NG_004428 |
| Build #39 labels | |
| Chromosomal location | 11:56,165,500-56,165,921 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks | Disrupted by Line repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5J2 | 83.82% | 136 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5J2B | 85% | 136 |
| Dog | OR5J2 | 85% | 136 |
| Mouse | Or5j3 | 79% | 140 |
| Rat | Or5j1 | 77% | 137 |
| Cow | OR5J2 | 81% | 140 |
| Orang | OR9S18 | 60% | 129 |
| Horse | OR5J2 | 80% | 140 |
| Chimp | OR5J2 | 85% | 136 |
Sequence information
| Nucleotide sequence |
GCATTTTTGCTGCATATTTCATTGATTATGTATCACTGCTAAAGCTGTCATGTTCTGACA CCTCCATGAATGAGTTGTTGCTGTTAACCTTCTCTGGAGTCATTGCCACGGCCACCTTCT TGATTGTGATCATTTCCTACATCTTCATTGCTTTTGCTATCCTAAGGATCTGCTCAGCAT CAGGCAGACAGAAAGCCTTCTCCACCTGTGCCTCTAACCTAACTGCTATGGCCATATTCT ACGGTACCTTAAGCTTTAGCTACATTCAGCCAAGCTCCCAGTATTCTGTGGAACAGGAGA AAGTAGTTTCTGTGTTCTATACACTAGTGATTCCCATGTTAAACCCATTGATATACAGTC TGAGAAACAAGGATGTAAAGCAGGCAGTGAAAAGAGCTATAGACATAAAACATTTCTCAT GT |
| Conceptual translation |
IFAAYFIDYVSLLKLSCSDTSMNELLLLTFSGVIATATFLIVIISYIFIAFAILRICSAS GRQKAFSTCASNLTAMAIFYGTLSFSYIQPSSQYSVEQEKVVSVFYTLVIPMLNPLIYSL RNKDVKQAVKRAIDIKHFSC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI) | |
| 11 | 55,933,084 | 55,933,084 | SNP | C/T | rs12282595 (DbSNP) | |
| 11 | 56,165,608 | 56,165,608 | SNP | C/T | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 99 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.