OR5M5P Olfactory Receptor
Gene Symbol | OR5M5P1 (View this gene in GeneCards) |
Family | 5 |
Subfamily | M |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | OR11-198, OR11-192, OR11-187, HsOR11.11.75P, ORL3507 |
External Ids | HGNC: 14810 GeneBank: AB065743, AF399360, BK004644, BK004652, BK004721, NG_004151 ORDB: ORL3507 |
Build #39 labels | OR5M5P |
Chromosomal location | 11:56,526,567-56,527,502 (-) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR5M10 | 67.32% | 306 |
OR5M11 | 66.67% | 306 |
OR5M2P | 66.03% | 312 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR5M5 | 91% | 312 |
Mouse | Or5m5 | 90% | 312 |
Rat | Or5m5 | 89% | 312 |
Cow | OR5M5 | 88% | 312 |
Orang | OR5G1 | 53% | 312 |
Horse | OR5M5 | 88% | 312 |
Chimp | OR5M10 | 66% | 312 |
Sequence information
Nucleotide sequence |
ATGGTTAGAGGAAATTCTACTTTGGTGACGGAATTTATTCTCTTGGGATTAAAGGATCTT CCAGAGCTTCAGCCCATCCTCTTTGTACTGTTCCTGCTAATCTACCTGATCACTGTCGGG GGGAACCTTGGGATGTTGGTGTTGATCAGGATAGATTCACGCCTCCACACCCCCATGTAT TTCTTTCTTGCTAGTTTGTCCTGCTTGGATTTGTATTACTCCACTAATGTGACTCCCAAG ATGTTGGTGAACTTCTTCTCAGACAAGAAAGCCATTTCCTATGCTGCTTGTTTAGTCCAG TGCTATTTTTTCATTGCTGTGGTGATTACTGAATATTATATGCTAGCTGTAATGGCCTAT GATAGGTATGTGGCCATCTGTAACCCTTTGCTTTACAGCAGCAAGATGTCCAAAGGGCTC TGTATTCGCCTGATTGCTGGTCCATATGTCTATGGGTTTCTTAGTGGACTGATGGAAACC ATGTGGACATACCACTTGACCTTCTGTGGCTCCAATATCATTAATCACTTCTACTGTGCT GACCCACCCCTCATCCGACTTTCCTGCTCTGACACTTTCATTAAGGAAACATCCATGTTT GTGGTAGCATGATTTAACCTCTCCAGCTCCCTCATCATAACCCTCATCTCCTACATCTTC ATTCTCATTGCCATCCTGAGGATGCGTTCTGCTGAAAGTAGGCACAAAGCGTTCTCCACC TGCGGGTCCCACCTGGTGGCAGTGACTGTGTTTTATGGAACCCTGTTCTGCATGTACGTT AGACCTCCCACGGACAGGTCAGTGGAACAGTCCAAAGTCATTGCTGTTTTCTACACTTTT GTAAGCCCTATGTTGAACCCCATCATCTATAGTTTGAGGAACAAGGATGTGAAACAAGCT TTTTGGAAACTGATCAGAAGAAACGTGCTTTTGAAG |
Conceptual translation |
MVRGNSTLVTEFILLGLKDLPELQPILFVLFLLIYLITVGGNLGMLVLIRIDSRLHTPMY FFLASLSCLDLYYSTNVTPKMLVNFFSDKKAISYAACLVQCYFFIAVVITEYYMLAVMAY DRYVAICNPLLYSSKMSKGLCIRLIAGPYVYGFLSGLMETMWTYHLTFCGSNIINHFYCA DPPLIRLSCSDTFIKETSMFVVAXNLSSSLIITLISYIFILIAILRMRSAESRHKAFST CGSHLVAVTVFYGTLFCMYVRPPTDRSVEQSKVIAVFYTFVSPMLNPIIYSLRNKDVKQA FWKLIRRNVLLK Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 56,294,153 | 56,294,152 | Ins(1) | -/C | rs34275135 (DbSNP) | |
11 | 56,294,338 | 56,294,338 | SNP | A/G | rs646472 (DbSNP) | |
11 | 56,294,275 | 56,294,275 | SNP | C/T | rs658845 (DbSNP) | |
11 | 56,294,818 | 56,294,818 | SNP | C/T | rs637912 (DbSNP) | |
11 | 56,294,431 | 56,294,431 | SNP | G/T | rs1945196 (DbSNP) | |
11 | 56,526,799 | 56,526,799 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
11 | 56,526,862 | 56,526,862 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
11 | 56,526,955 | 56,526,955 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
11 | 56,527,342 | 56,527,342 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
11 | 100 | -100 | SNP | G/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
CopyNumber | 129 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.