OR6C69P Olfactory Receptor
| Gene Symbol | OR6C69P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR12.5.7P |
| External Ids | HGNC: 31298 GeneBank: NG_004431 |
| Build #39 labels | |
| Chromosomal location | 12:55,262,539-55,263,434 (+) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6C66P | 67.22% | 299 |
| OR6C74 | 69.9% | 299 |
| OR6C76 | 67.89% | 299 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6C69 | 85% | 299 |
| Mouse | Or6c69 | 85% | 299 |
| Mouse | Or6c69c | 85% | 299 |
| Mouse | Or6c69b | 85% | 299 |
| Rat | Or6c69c | 85% | 299 |
| Rat | Or6c69 | 83% | 299 |
| Rat | Or6c69b | 83% | 299 |
| Rat | Or6c69d | 83% | 299 |
| Cow | OR6C69 | 85% | 299 |
| Orang | OR6C74 | 69% | 299 |
| Horse | OR6C332P | 77% | 299 |
| Chimp | OR6C74 | 70% | 299 |
Sequence information
| Nucleotide sequence |
ATGAGAAACCATACCAGAATGACGGTGTTCATCCTAGCAGGTTTGACTGATAACCCAGAA TTGAAAGTTGTGTTGTTTATCTTCCTGCTTCTCACCTATGTGCTGAGCATCACTGGCAAT CTGATTATCATCACACTCACCCTGGTGGATATTCACCTTAAGACTCCCATGTATTTTTTC CTTCGGAATTTTTCCTTCTTAGAAATTTCCTATACTACTACATGCATCCCTAAATTGTTA GTTACTATGGCAACTGGGGACAAAAGCATTTCCTATAACAGTTGTGTCACTCAAGTGTTT TTTGCCTTCCTACTTGGAGGGTCAGAATTTTACTTGCTGGCAGCCATGTCCTACAACCGC TATGTGGCCATCTGTAAGCCTCTGCATTACACCACCATCATGAGCAGCAAAATCTGCATG CATCTTGTGCTTGGGTGTTGGCTTGCTGGTTTTCTCATCATCTTTCCACACTCCCATTAG GCCTAAATCTTGACTTCTGTGCCTCCAACGTCGTTGATCATTTCTACTGTGACACTACTC CACTCCTGCAGATTTCTTGCACAGACACGCAGCTCCTGGAGAGGATGGGATTAATTTCAG CGTTGGTGACACTCTTAGTCACATTGGTAATGGTGATAATATCATATACTTACATTGCCC TGACAATTCTAAAAATCCCTTCAACCAGTGAGAAGAAAAAGGCTTTTTCCACATGTTCTT CTCACATGATTGTGATATCCCTTTCTTATGGCAGCTGCATCTTCATGTATGTTAAGCCAT TGGTCAAACAAAAGATATCTTTTTCAAAGGGAATTTCGGTGCTCAATACCTCTGTTGCTC CACTTTTGAACCCTTTCATCTGTACCTTAAGAAACCAACAAGTGAAAAAAGCCTTC |
| Conceptual translation |
MRNHTRMTVFILAGLTDNPELKVVLFIFLLLTYVLSITGNLIIITLTLVDIHLKTPMYFF LRNFSFLEISYTTTCIPKLLVTMATGDKSISYNSCVTQVFFAFLLGGSEFYLLAAMSYNR YVAICKPLHYTTIMSSKICMHLVLGCWLAGFLIIFPHS/LGLNLDFCASNVVDHFYCDT TPLLQISCTDTQLLERMGLISALVTLLVTLVMVIISYTYIALTILKIPSTSEKKKAFSTC SSHMIVISLSYGSCIFMYVKPLVKQKISFSKGISVLNTSVAPLLNPFICTLRNQQVKKAF Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI) | |
| 12 | 55,262,833 | 55,262,833 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 12 | 55,263,409 | 55,263,409 | SNP | G/C | 1000GP (CEU) | |
| 12 | 55,656,369 | 55,656,369 | SNP | A/C | rs11611782 (DbSNP) | |
| 12 | 55,656,486 | 55,656,486 | SNP | C/T | rs74090625 (DbSNP) | |
| 12 | 55,656,617 | 55,656,617 | SNP | A/G | rs7978555 (DbSNP) | |
| 12 | 55,656,996 | 55,656,996 | SNP | A/G | rs73324704 (DbSNP) | |
| 12 | 55,657,073 | 55,657,073 | SNP | A/G | rs12812755 (DbSNP) | |
| 12 | 55,657,193 | 55,657,193 | SNP | C/G | rs35402499 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.