OR6C72P Olfactory Receptor
| Gene Symbol | OR6C72P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR12.5.8P |
| External Ids | HGNC: 31301 GeneBank: NG_004432 |
| Build #39 labels | |
| Chromosomal location | 12:55,283,750-55,284,683 (+) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6C6 | 75% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6C6 | 73% | 312 |
| Mouse | Or6c208 | 78% | 311 |
| Rat | Or6c215 | 78% | 313 |
| Cow | OR6C75 | 68% | 312 |
| Orang | OR6C70 | 70% | 305 |
| Horse | OR6C72 | 83% | 310 |
| Chimp | OR6C6 | 76% | 305 |
Sequence information
| Nucleotide sequence |
ATGAAGAACCAATCAATGGGGATAGTGTTCACTCTGCTTGGACTGACAAACGACCCCCTA CTACAGATTGTGATTTTTTTGTTTCTATTTTTTAATTATGTCCTGAGCCTGATGGGGAAC TTAACCATTATCCTCCTCAGCCTGCTGGATCCATGGCTCAAGACTCCAATGTATTTTTTC CTCCGAAATTTCTCCTTCTTAGAAATTTCATTCACAACTGTTTGCATTACACGATTCTCG ACAAGCATTCTGACTGGAGACAAGACAATTTCCTACGATGCTTGTGCAATTCAATTATTC TTCTTTCTTTTATTAGGAGTTACTGAGTTTTACCTCCTGGCTGCCATGTCCTATGACTGC TACATTGCCATCTGCAAACCACTGCATTATCCAATCATTATGAGCAGCAAAGCGTGCTAC CAACTTGTAATCATCTCTTGGGTAGCTGGATTCGTAATCATCTTTCCCCTTTTGGTCTTG GGACTCAAGCTGGATTTCTGTGCTTCCAAACTATTGATCACTTCTTATGTGACACTTCTC CTATTCTACAGATTTCTTGCACAGATACAAGTTTCATAGAATTAATGGCTTTTATCTTAG CTGTGCTGACACTCATCACCACATTGTTGTTAGTGATCCTCTCCTACACATACATCATCA AAACCATTCTAAAATTCCCTTCTGTTCAACAACACACCAAGGCTTTTTCCACTTGTTCTT CACACATGATTGTTGTCTCTATTACTTATGGGAGTTGTATCTTTATGTATATGAAACCAT CAGCAAAAGAAAGGGTGACTTTAACTAAAGGAGTATCTGTACTCAATATCTCTGTTGCCC CTTTACTCAACCCTTTCACACTCTAAGGAACCAGAAGGTGAAAGAAGCTCTCAAGGACAT GCTTCAAAGATTTTGCTATTTTTAAAACAAGGCA |
| Conceptual translation |
MKNQSMGIVFTLLGLTNDPLLQIVIFLFLFFNYVLSLMGNLTIILLSLLDPWLKTPMYFF LRNFSFLEISFTTVCITRFSTSILTGDKTISYDACAIQLFFFLLLGVTEFYLLAAMSYDC YIAICKPLHYPIIMSSKACYQLVIISWVAGFVIIFPLLVLGLKLDFCAS/TIDHFLCDT SPILQISCTDTSFIELMAFILAVLTLITTLLLVILSYTYIIKTILKFPSVQQHTKAFSTC SSHMIVVSITYGSCIFMYMKPSAK/KGDFN\GVSVLNISVAPLLNPF/TLRNQKVKE ALKDMLQRFCYFXKA Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI) | |
| 12 | 55,283,903 | 55,283,903 | SNP | T/C | 1000GP (CEU) | |
| 12 | 55,283,923 | 55,283,923 | SNP | T/G | 1000GP (CEU) | |
| 12 | 55,283,972 | 55,283,972 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 12 | 55,284,249 | 55,284,249 | SNP | G/A | 1000GP (CHBJPT) | |
| 12 | 55,284,350 | 55,284,350 | SNP | C/T | 1000GP (CEU) | |
| 12 | 55,284,388 | 55,284,388 | SNP | C/T | 1000GP (CEU) | |
| 12 | 55,284,444 | 55,284,444 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 12 | 55,677,756 | 55,677,756 | SNP | C/T | rs10783719 (DbSNP) | |
| 12 | 55,677,947 | 55,677,947 | SNP | A/G | rs12310079 (DbSNP) | |
| 12 | 55,678,228 | 55,678,228 | SNP | A/C | rs6581026 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.