Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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Chromosome:

OR6C72P Olfactory Receptor

Gene Symbol OR6C72P1 (View this gene in GeneCards)
Family 6
Subfamily C
Pseudogene Yes
CORP pseudogene probability score
Aliases HsOR12.5.8P
External Ids HGNC: 31301   GeneBank: NG_004432   
Build #39 labels
Chromosomal location 12:55,283,750-55,284,683 (+)
Cluster 12@56
Synteny CLIC#31
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR6C6 75% 312

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR6C6 73% 312
Mouse Or6c208 78% 311
Rat Or6c215 78% 313
Cow OR6C75 68% 312
Orang OR6C70 70% 305
Horse OR6C72 83% 310
Chimp OR6C6 76% 305

Sequence information

Nucleotide sequence ATGAAGAACCAATCAATGGGGATAGTGTTCACTCTGCTTGGACTGACAAACGACCCCCTA
CTACAGATTGTGATTTTTTTGTTTCTATTTTTTAATTATGTCCTGAGCCTGATGGGGAAC
TTAACCATTATCCTCCTCAGCCTGCTGGATCCATGGCTCAAGACTCCAATGTATTTTTTC
CTCCGAAATTTCTCCTTCTTAGAAATTTCATTCACAACTGTTTGCATTACACGATTCTCG
ACAAGCATTCTGACTGGAGACAAGACAATTTCCTACGATGCTTGTGCAATTCAATTATTC
TTCTTTCTTTTATTAGGAGTTACTGAGTTTTACCTCCTGGCTGCCATGTCCTATGACTGC
TACATTGCCATCTGCAAACCACTGCATTATCCAATCATTATGAGCAGCAAAGCGTGCTAC
CAACTTGTAATCATCTCTTGGGTAGCTGGATTCGTAATCATCTTTCCCCTTTTGGTCTTG
GGACTCAAGCTGGATTTCTGTGCTTCCAAACTATTGATCACTTCTTATGTGACACTTCTC
CTATTCTACAGATTTCTTGCACAGATACAAGTTTCATAGAATTAATGGCTTTTATCTTAG
CTGTGCTGACACTCATCACCACATTGTTGTTAGTGATCCTCTCCTACACATACATCATCA
AAACCATTCTAAAATTCCCTTCTGTTCAACAACACACCAAGGCTTTTTCCACTTGTTCTT
CACACATGATTGTTGTCTCTATTACTTATGGGAGTTGTATCTTTATGTATATGAAACCAT
CAGCAAAAGAAAGGGTGACTTTAACTAAAGGAGTATCTGTACTCAATATCTCTGTTGCCC
CTTTACTCAACCCTTTCACACTCTAAGGAACCAGAAGGTGAAAGAAGCTCTCAAGGACAT
GCTTCAAAGATTTTGCTATTTTTAAAACAAGGCA
Conceptual translation MKNQSMGIVFTLLGLTNDPLLQIVIFLFLFFNYVLSLMGNLTIILLSLLDPWLKTPMYFF
LRNFSFLEISFTTVCITRFSTSILTGDKTISYDACAIQLFFFLLLGVTEFYLLAAMSYDC
YIAICKPLHYPIIMSSKACYQLVIISWVAGFVIIFPLLVLGLKLDFCAS/TIDHFLCDT
SPILQISCTDTSFIELMAFILAVLTLITTLLLVILSYTYIIKTILKFPSVQQHTKAFSTC
SSHMIVVSITYGSCIFMYMKPSAK/KGDFN\GVSVLNISVAPLLNPF/TLRNQKVKE
ALKDMLQRFCYFXKA

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
12 100 -100 SNP T/C 1000GP (YRI, YRI, YRI, YRI)
12 55,283,903 55,283,903 SNP T/C 1000GP (CEU)
12 55,283,923 55,283,923 SNP T/G 1000GP (CEU)
12 55,283,972 55,283,972 SNP T/C 1000GP (CEU, CHBJPT)
12 55,284,249 55,284,249 SNP G/A 1000GP (CHBJPT)
12 55,284,350 55,284,350 SNP C/T 1000GP (CEU)
12 55,284,388 55,284,388 SNP C/T 1000GP (CEU)
12 55,284,444 55,284,444 SNP C/A 1000GP (CEU, CHBJPT)
12 55,677,756 55,677,756 SNP C/T rs10783719 (DbSNP)
12 55,677,947 55,677,947 SNP A/G rs12310079 (DbSNP)
12 55,678,228 55,678,228 SNP A/C rs6581026 (DbSNP)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.