OR6L2P Olfactory Receptor
| Gene Symbol | OR6L2P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | L |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3271 |
| External Ids | HGNC: 15125 GeneBank: HS18QT086, NG_004252 ORDB: ORL3271 |
| Build #39 labels | OR6L2P |
| Chromosomal location | 10:133,430,394-133,431,318 (-) |
| Cluster | 10@135 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6L1P | 98.68% | 302 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6AE1 | 54% | 310 |
| Mouse | Or6ae1 | 58% | 310 |
| Rat | Or6ae1 | 59% | 311 |
| Cow | OR6AE1P | 60% | 248 |
| Horse | OR6AE1 | 58% | 314 |
| Chimp | OR6A2 | 41% | 307 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BF896302 |
Sequence information
| Nucleotide sequence |
AGTTTGTCTTTCTGGGCTTCCCAGAGCTGCCTGACCAGGAGGGCCACATACAATTCCAGC AATACTGTGGTGACAGAGTTTGTCTTTCTGAGCTTCCCAGAGCTGCGCCATCTTCAAGGG CTGCTATTTGGTCACTCCTCATCATCTATGTGGTGACCATCCTAGAGGACCTGGCTGTCG TGGGGACCATCAGAGCCAGCCACCACCTGCACATATCCACACACCTCTTCCTGGCCAAAC TCTCGGTGCTGGAGACCCTGTACACCTCGGTCACCGTCCCAAAGCTGTTGGCCGGACTCC CAGCACGAGCGACGACCATCTATCTCCTTCTCGGGGCACCTCACCTGGCTGCTCCTCTTC CTCTCACTCAGCTCCTCTGAGTGCATCCTCCCGGCCAACATGGACTGTGACTGGCACCCG GTCATCTGCCACCTGCTGCACTACCCAGCCCATCATGGACTCCATGCAGCTGGCTCTGCC TGCACCTGGCCATCAGCGCCCAGCTCAGCAGCTTCCCAGCCTCCTTTGTGTCCACGGCTC TCAACTCCAGCCTGAGGCTCCGCAGCCCCGATGTCCTCAACCACTTCTGTGATATCCCAC CCCCGCTAGGGCTCTCTTGCTCCAGCACCACTACCATAGAAATGCGGACTCAGGCAGCCC AGGTGATCCTTGCGGCTTCCCTGCAGGCAACCACGGTCTCCTACACCCACATCCTGGCCA GATCGCTGAGGATTCCAGAAAGGCCCAGCAGCTAAAGGCCTTCCCCACCTATGCCTCCCA CCTGGGGTGGCGGCTCCTCTAACCTCATCAAGCTGGTGTCAGGGGTCTACTTGGTTGGGA TCCCTCTGCTCAAACCCATCATCTACTGCCTGGGAACTGCAACATCAGGGAGGCCCTGGC CAAACTCCTCCAGGCCCTTCCCCTT |
| Conceptual translation |
SLSFWASQSCLTRRATYNSSNTVVTEFVFLSFPELRHLQGLLFG/LLIIYVVTILEDLA VVGTIRASHHLHISTHLFLAKLSVLETLYTSVTVPKLLAGLP/TSDDH/ISFSGHLTW LLLFLSLSSSECILPANMDCDWHPVICHLLHYPAHHGLHAA/LCLHLAISAQLSSFPAS FVSTALNSSLRLRSPDVLNHFCDIPPPLGLSCSSTTTIEMRTQAAQVILAASLQATTVSY THILARSLRIP/KAQQLKAFPTYASHLGWR\SNLIKLVSGVYLVGIPLLKPIIYCL/ NCNIREALAKLLQALPL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 10 | 133,431,074 | 133,431,074 | SNP | C/T | 1000GP (CEU) | |
| 10 | 135,244,586 | 135,244,586 | SNP | G/T | rs2987801 (DbSNP) | |
| 10 | 135,244,739 | 135,244,739 | SNP | C/G | rs2248512 (DbSNP) | |
| 10 | 135,244,753 | 135,244,753 | SNP | C/T | rs61868297 (DbSNP) | |
| 10 | 135,244,774 | 135,244,781 | Del(684) | Del | rs71374324 (DbSNP) | |
| 10 | 135,244,775 | 135,244,775 | SNP | C/T | rs61868298 (DbSNP) | |
| 10 | 135,244,796 | 135,245,479 | Del(683) | Del | rs67775028 (DbSNP) | |
| 10 | 135,244,808 | 135,244,808 | SNP | C/T | rs61074535 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 151 (Hasin) | |||
| 10 | 135,003,417 | 135,264,045 | CopyNumber | Variation_5272 (DGV), Variation_5273 (DGV) |
| 10 | 135,018,168 | 135,432,685 | CopyNumber | Variation_2896 (DGV) |
| 10 | 135,079,801 | 135,264,045 | CopyNumber | Variation_5271 (DGV) |
| 10 | 135,079,862 | 135,434,551 | CopyNumber | Variation_8673 (DGV) |
| 10 | 135,085,168 | 135,264,045 | CopyNumber | Variation_5270 (DGV) |
| 10 | 135,128,234 | 135,264,045 | CopyNumber | Variation_5269 (DGV) |
| 10 | 135,184,119 | 135,434,551 | CopyNumber | Variation_8671 (DGV) |
| 10 | 135,184,421 | 135,434,551 | CopyNumber | Variation_34537 (DGV) |
| 10 | 135,202,013 | 135,386,618 | CopyNumber | Variation_34865 (DGV) |
| 10 | 135,202,594 | 135,434,303 | CopyNumber | Variation_29602 (DGV), Variation_53644 (DGV) |
| 10 | 135,217,956 | 135,284,115 | CopyNumber | Variation_53604 (DGV) |
| 10 | 135,217,956 | 135,377,448 | CopyNumber | Variation_48474 (DGV), Variation_53842 (DGV) |
| 10 | 135,217,956 | 135,434,303 | CopyNumber | Variation_48475 (DGV) |
| 10 | 135,222,326 | 135,390,508 | CopyNumber | Variation_3830 (DGV) |
| 10 | 135,228,871 | 135,390,508 | CopyNumber | Variation_2162 (DGV) |
| 10 | 135,236,012 | 135,387,833 | CopyNumber | Variation_6852 (DGV) |
| 10 | 135,237,022 | 135,400,723 | CopyNumber | Variation_65826 (DGV) |
| 10 | 135,237,482 | 135,250,024 | CopyNumber | Variation_71206 (DGV) |
| 10 | 135,238,852 | 135,244,585 | CopyNumber | Variation_75459 (DGV) |
| 10 | 135,238,852 | 135,245,433 | CopyNumber | Variation_85558 (DGV) |
| 10 | 135,238,852 | 135,248,134 | CopyNumber | Variation_75456 (DGV) |
| 10 | 135,241,075 | 135,245,488 | CopyNumber | Variation_85561 (DGV) |
| 10 | 135,241,592 | 135,245,476 | CopyNumber | Variation_71201 (DGV) |
| 10 | 135,241,898 | 135,244,922 | Deletion, CopyNumber | #313 (Waszak) |
| 10 | 135,242,011 | 135,245,433 | CopyNumber | Variation_75455 (DGV) |
| 10 | 135,242,830 | 135,244,585 | CopyNumber | Variation_85563 (DGV) |
| 10 | 135,242,877 | 135,296,269 | CopyNumber | Variation_37784 (DGV) |
| 10 | 135,244,585 | 135,245,542 | InDel | Variation_75454 (DGV) |
| 10 | 135,244,716 | 135,245,400 | InDel | Variation_39797 (DGV) |
| 10 | 135,244,747 | 135,245,542 | InDel | Variation_85559 (DGV) |
| 10 | 135,244,747 | 135,246,946 | CopyNumber | Variation_85564 (DGV) |
| 10 | 135,244,747 | 135,248,134 | CopyNumber | Variation_75462 (DGV) |
| 10 | 135,244,773 | 135,245,457 | InDel | Variation_24423 (DGV) |
| 10 | 135,244,791 | 135,245,476 | InDel | Variation_71196 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.