OR6M2P Olfactory Receptor
| Gene Symbol | OR6M2P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | M |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-269, HsOR11.18.3P, ORL3481 |
| External Ids | HGNC: 14713 GeneBank: BK004638, NG_004155 ORDB: ORL3481 |
| Build #39 labels | OR6M2P |
| Chromosomal location | 11:123,840,958-123,841,903 (-) |
| Cluster | 11@124 |
| Synteny | CLIC#29 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6M1 | 72.99% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6M2 | 83% | 315 |
| Dog | OR6M2B | 82% | 315 |
| Mouse | Or6s1 | 53% | 309 |
| Rat | Or6s1 | 51% | 314 |
| Cow | OR6M7 | 81% | 314 |
| Cow | OR6M2 | 81% | 314 |
| Cow | OR6M2C | 81% | 314 |
| Orang | OR6M1P | 73% | 311 |
| Horse | OR6M8 | 85% | 313 |
| Horse | OR6M2 | 83% | 315 |
| Chimp | OR6M1 | 73% | 313 |
Sequence information
| Nucleotide sequence |
GCAGTGGACATCCAAAATCAGACCACAGTGACTGAGTTTACCCTGACGGCCTTTCCTGTT CTTCAGCAGCTTCAAATTTCCCTTTTTGCAGTCCTCTTGTTTACTTATATGCTTACTCTA ACAGGAAACGTTGCCATCATTTCCCTAACATGTGCGAATCATCGCCTCCAAACCCCAATG TACTTCTTCCTCAGTAATTTGTCAATTTTGGACATTTTTTTCACCACCTCAGTTATCCCA AAGCTATTAGCCTGTCTCCTGCAGGACAAGAAGACCATATCTTTTGCTGGGTGCATCACC CAAACTTATTTCCTTTGTTTTCTTGGGGACAGTGGAGTTTATCCTCTTGGCAGTGATGTC CTTTGACTGCTACGTGGCCATCTGTGACCCCCTGCACTACACCATTATCATGAACAGCAG GGCCTGCCTCCTACTAGTTCTGGGCTGCTGGGTTGGAGCCTTCCTGTCTGTGTTGTGCCC AACCATTGTGGTGTCCAGATTGCCTTTCTGTTACAAGGAAATTAGTCACTTCTTCTGTGA CATCACCCCTCTGCTACATGTGTCCTGTATAGACACTCATTTCATCGAGATGATAAACTT CCTCTTATCTTCCCTCATCCTCCTGACCTCACTGGTGCTCACCACTGTGTCCTACATCTA CATCATTTCTACCATCCTGCACATCCCCTCAGCCCAAGGACGTCGGAAGGCCTTTTCCAC GTGCGCTTCCCACATCACCGTCATTTCCATCGCTTATATAAGCAACATCTTCAGGTATGT GAGGCCCAGCCAGAGTCATTCAATGGGTTTTGACAAGGTGACAGCTGTCCCCACAATGGT GACCCCTCTTCTGAATCCCTTCACTTATAGTCTAAGAAATGAAAAGGTAAAGGCAGTCTT GAAAGAAGCAGTCAGCAAAATTATGTCCTCATGGCACAGGAGAACT |
| Conceptual translation |
AVDIQNQTTVTEFTLTAFPVLQQLQISLFAVLLFTYMLTLTGNVAIISLTCANHRLQTPM YFFLSNLSILDIFFTTSVIPKLLACLLQDKKTISFAGCITQTYF\VFLGTVEFILLAVM SFDCYVAICDPLHYTIIMNSRACLLLVLGCWVGAFLSVLCPTIVVSRLPFCYKEISHFFC DITPLLHVSCIDTHFIEMINFLLSSLILLTSLVLTTVSYIYIISTILHIPSAQGRRKAFS TCASHITVISIAYISNIFRYVRPSQSHSMGFDKVTAVPTMVTPLLNPFTYSLRNEKVKAV LKEAVSKIMSSWHRRT Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/A | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 11 | 123,711,742 | 123,711,742 | Del(1) | -/C | rs34256077 (DbSNP) | |
| 11 | 123,711,807 | 123,711,807 | SNP | A/C | rs2186743 (DbSNP) | |
| 11 | 123,711,892 | 123,711,892 | SNP | A/G | rs61908461 (DbSNP) | |
| 11 | 123,711,924 | 123,711,923 | Ins(1) | -/G | rs34980279 (DbSNP) | |
| 11 | 123,712,153 | 123,712,153 | SNP | C/G | rs4936852 (DbSNP) | |
| 11 | 123,712,264 | 123,712,264 | SNP | A/C | rs685326 (DbSNP) | |
| 11 | 123,712,288 | 123,712,288 | SNP | A/C | rs685647 (DbSNP) | |
| 11 | 123,712,296 | 123,712,296 | SNP | A/C | rs685660 (DbSNP) | |
| 11 | 123,712,327 | 123,712,327 | SNP | A/C | rs685713 (DbSNP) | |
| 11 | 123,712,403 | 123,712,403 | SNP | A/C | rs686115 (DbSNP) | |
| 11 | 123,712,514 | 123,712,514 | SNP | A/C | rs673035 (DbSNP) | |
| 11 | 123,712,525 | 123,712,525 | SNP | A/C | rs673041 (DbSNP) | |
| 11 | 123,712,607 | 123,712,607 | SNP | A/C | rs673446 (DbSNP) | |
| 11 | 123,841,099 | 123,841,099 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 123,841,179 | 123,841,179 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 123,841,184 | 123,841,184 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 123,841,270 | 123,841,270 | SNP | C/T | 1000GP (CEU) | |
| 11 | 123,841,445 | 123,841,445 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 123,841,679 | 123,841,679 | SNP | G/A | 1000GP (CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.