OR7D1P Olfactory Receptor
| Gene Symbol | OR7D1P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | D |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | CIT-B-440L2, OR19-131, OR19-13, OR19-A, HsOR19.2.13P, ORL3777 |
| External Ids | HGNC: 8377 GeneBank: AB065577, AF399428, BK004547, NG_002212, U86251 ORDB: ORL3777 |
| Build #39 labels | OR7D1P |
| Chromosomal location | 19:9,235,144-9,236,076 (+) |
| Cluster | 19@9b |
| Synteny | CLIC#42 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7D4 | 90.03% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7D4 | 78% | 311 |
| Mouse | Or7d9 | 75% | 311 |
| Rat | Or7d9 | 74% | 311 |
| Cow | OR7D2 | 66% | 311 |
| Orang | OR7D4 | 90% | 311 |
| Orang | OR4D4CP | 90% | 293 |
| Horse | OR7D4 | 78% | 311 |
| Chimp | OR7D4B | 94% | 311 |
| Chimp | OR7D4 | 91% | 311 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DB341718 |
| mRNA | BC141584 |
| GNF Atlas2 | gnf1h01869_at |
| GNF Atlas2 | gnf1h01870_s_at |
| GNF Atlas2 | gnf1h01871_x_at |
Sequence information
| Nucleotide sequence |
ATGGAAGCAGAAAACCTTACAGAATTATCAGAATTCCTCCTCTTAGGACTCTCAGATGAT CCTGAACTGCAGCCCGTCCTCTTTGGGCTGTTCCTGTCCATGTACCTGGTCATGGTGCTG GGGAACCTACTCATCATCCTGGCCGTCAGCTCTGACTCCCACCTCCACAGCCCCATGTAA TTCTTCCTCTCCAACTTGTCCTTTGTGGACACCTGTTTCATCTGCACCACAGTCCCCAAG ATGCTAGTGAACATCCAGGCACGGAGCAAAGACATCTCCTACATGGGGTGCCTCACTCAG GTGTATTTTTAAATGATGTTTGCTGGAATGGATACTTTCCTACTGGCTGTGATAGCCTAT GACCGGTTTGTGGCCATCTGCCACCCACTGCAGTACATGGTCATCATAAACCCCCATCTC TGTGGCCTCCTGGTTCTGGCATCTTGGTTCATCATTTTCTGGTTCTCCCTGGTTCATATT CTACTGATGAAGAGGCTGACCTTCTCCACAGGCACTGAGATTCCGCATTTCTTCTGTGAA CTGGCTCAGGTCCTCAAGGTGGCCCGCTCTGATGCTCTCCTCATTAACATTGTCTTGTAT GTGGCCATGGCACTGCTGGGTGTGTTTCCTGTAGCTGGGATCCTCTTCTCCTACTCTCAG ATTGTCTCCTCCTTAATGAGAATGTCCTCCACCGAGGGCAAGTACAAAGCCTTTTCCACC TGTGGATCTCACCTCTGTGTGGTCTCCTTGTTCTATGGAACAGGACTTGGGGTCTATCTC AGTTCTGCTGTGACCCATTCTTCCCAGAGCAGCTCCATGGCCTCAGTGATGTACGCCATG GTCACCCCCATGCTGAACCCCTTCATCTACAGCCTGAGGAACAAGGATGTGAAGGGGGCC CTGGGGAGACTCCTTAGCAGGGCAGCCTCTTGT |
| Conceptual translation |
MEAENLTELSEFLLLGLS\ILNCSP/LFGLFLSMYLVMVLGNLLIILAVSSDSHLHSP MXFLSNLSFVDTCFICTTVPKMLVNIQARSKDISYMGCLTQVYFXMFAGMDTFLLAVI AYDRFVAICHPLQYMVIINPHLCGLLVLASWFIIFWFSLVHILLMKRLTFSTGTEIPHFF CELAQVLKVARSDALLINIVLYVAMALLGVFPVAGILFSYSQIVSSLMRMSSTEGKYKAF STCGSHLCVVSLFYGTGLGVYLSSAVTHSSQSSSMASVMYAMVTPMLNPFIYSLRNKDVK GALGRLLSRAASC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 19 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI) | |
| 19 | 9,235,379 | 9,235,379 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 19 | 9,235,727 | 9,235,727 | SNP | T/A | 1000GP (CHBJPT) | |
| 19 | 9,235,837 | 9,235,837 | SNP | G/A | 1000GP (CHBJPT) | |
| 19 | 9,235,923 | 9,235,923 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 19 | 9,345,964 | 9,345,964 | SNP | A/G | rs73920711 (DbSNP) | |
| 19 | 9,346,130 | 9,346,130 | SNP | A/T | rs1968135 (DbSNP) | |
| 19 | 9,346,167 | 9,346,167 | SNP | C/T | rs3926918 (DbSNP) | |
| 19 | 9,346,173 | 9,346,173 | SNP | A/G | rs3926919 (DbSNP) | |
| 19 | 9,346,230 | 9,346,229 | Ins(1) | -/C | rs34029269 (DbSNP) | |
| 19 | 9,346,320 | 9,346,322 | Del(3) | -/CTT | rs34854496 (DbSNP) | |
| 19 | 9,346,427 | 9,346,427 | SNP | C/T | rs1968136 (DbSNP) | |
| 19 | 9,346,482 | 9,346,482 | SNP | C/T | rs2015121 (DbSNP) | |
| 19 | 9,346,513 | 9,346,513 | SNP | A/G | rs61744462 (DbSNP) | |
| 19 | 9,346,599 | 9,346,599 | SNP | C/G | rs1985937 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.