OR7E28P Olfactory Receptor
| Gene Symbol | OR7E28P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | hg616, OST128, HsOR2.3.2P, ORL4103 |
| External Ids | HGNC: 8400 GeneBank: AF399378, NG_004131 ORDB: ORL4103 |
| Build #39 labels | OR7E133P, OR7E28P, OR7E107P, OR7E27P |
| Chromosomal location | 2:158,862,345-158,863,291 (+) |
| Cluster | 2@160 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E26P | 91.93% | 322 |
| OR7E31P | 88.57% | 315 |
| OR7E36P | 89.31% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E24 | 70% | 315 |
| Mouse | Or7e177 | 65% | 312 |
| Rat | Or7e173 | 65% | 307 |
| Cow | OR7E193 | 70% | 301 |
| Orang | OR7E15P | 86% | 315 |
| Orang | OR7E14P | 84% | 315 |
| Orang | OR7E31DP | 87% | 297 |
| Horse | OR7E225 | 69% | 308 |
| Chimp | OR7E26P | 93% | 322 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | EC516607 |
Sequence information
| Nucleotide sequence |
AGTTGTCCAATCTCTACAGACCCACAGAATCTAACAGATGTCTCTATATTCCTCCTCCTA GAAGCTCAGAGGATCCAGAACGGCTGTTCCTGTCCATGTGCCTGGTCACGGTGCTGGGGA ACCTGCTCATCATCCTGGCCGTCACCCCTGACTCCCACCTCCACATCCCCATGTACTTCT TCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATGA TTGTGGACATCCAGTCTCACAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGATGT CTCTCTTTGCCATTTTTGGAGGCATGGAAGAGAGACATGCTCCTGAGTGTGATGGCCTAT GACCGGTTTGTAGCCATCTGTCACCCTCTATGTCATTCAGCCATCACGAACCCGTGTTTC TGTGGCTTTCTAGTTTTGTTGTCTTTTTTTTTTCTCAGTCTTTTAGACGCCCAGCTGCAC AACTTGATTGCCTTACAAAGGACCTGCTTCAAGGATGTGGAAATTCCTAATTTCTTCTGT GACCCTTCTCAATTCCCCGTCTTGCATGTTGTGGCACCTTCACCAATAACATAATCATGT ATTTCCCTGCTGCCATATTTGGTTTTCTTCCCATCTCGGGGACCCTTTTCTCTTACGATA AAATTGTTTTCTCCATTCTGAGGGTTTCATCATCAGGTGGGAAGCATAAGGCCTTCTCCA CCAGGGGGTCTCACCTGTCAGTTGTTTGCTGATTTTATGGAACAGGCATTGGAGGCTACC TCAGTTCAGATGTGTCATCTTCCCCGAGAAAGGCTGCAGTGGCCTCAGTGATGTACACGG TGGCCATCCCCATGCTGAACCCCTTCATCTACAGCCTGAGAAACAGGGATATTAAAAGTG TCCTGCGGCAGCCGCACGGCAGCACGGTCTCATCTCAATATCTTCTT |
| Conceptual translation |
SCPISTDPQNLTDVSIFLLLE/SEDPERLFLSMCLVTVLGNLLIILAVTPDSHLHIPMY FFLSNLSLPDIGFTSTTVPKMIVDIQSHSRVISYAGCLTQMSLFAIFGGMEE\MLLSVM AYDRFVAICHPLCHSAITNPCFCGFLVLLSFFFLSLLDAQLHNLIALQRTCFKDVEIPNF FCDPSQF/RLACCGTFTNNIIMYFPAAIFGFLPISGTLFSYDKIVFSILRVSSSGGKHK AFSTRGSHLSVVCXYGTGIGGYLSSDVSSSPRKAAVASVMYTVAIPMLNPFIYSLRNRD IKSVLRQPHGSTVSSQYLL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 2 | 159,719,322 | 159,719,322 | SNP | A/G | rs9751996 (DbSNP) | |
| 2 | 159,719,270 | 159,719,270 | SNP | A/G | rs72491238 (DbSNP) | |
| 2 | 159,719,031 | 159,719,031 | SNP | A/G | rs34995873 (DbSNP) | |
| 2 | 159,718,996 | 159,718,996 | SNP | C/T | rs10169584 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 2 | 159,710,696 | 159,730,096 | CopyNumber | Variation_38893 (DGV) |
| 2 | 159,651,734 | 159,953,466 | CopyNumber | Variation_53156 (DGV) |
| 2 | 159,706,274 | 159,747,664 | CopyNumber | Variation_68193 (DGV) |
| CopyNumber | 131 (Hasin) | |||
| 2 | 159,718,757 | 159,721,803 | Deletion, CopyNumber | #257 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR7E89PandOR7E28P.aApr07 | exon_5UTR | chr2 | 158,804,298 | 158,804,369 | + | |
| main_exon | CDS_partial | chr2 | 158,862,409 | 158,862,954 | + | |