OR7E38P Olfactory Receptor
| Gene Symbol | OR7E38P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | AC004967, OST127, HsOR7.3.2P, ORL3184 |
| External Ids | HGNC: 8411 GeneBank: AF399392, BC015431, BC029615, BC042035, BC062733, NG_002209, XM_499076 ORDB: ORL3184 |
| Build #39 labels | OR7E38P |
| Chromosomal location | 7:97,966,092-97,967,077 (-) |
| Cluster | 7@98 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E36P | 90.36% | 332 |
| OR7E37P | 89.73% | 331 |
| OR7E39P | 91.8% | 317 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E24 | 70% | 326 |
| Mouse | Or7e178 | 66% | 310 |
| Rat | Or7e173 | 66% | 306 |
| Cow | OR7E186 | 73% | 296 |
| Orang | OR7E14P | 87% | 317 |
| Orang | OR7E15P | 87% | 317 |
| Orang | OR7E12P | 85% | 312 |
| Horse | OR7E220 | 70% | 309 |
| Chimp | OR7E39P | 93% | 317 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | H78008 |
| mRNA | BC122864 |
| GNF Atlas2 | 217499_x_at |
Sequence information
| Nucleotide sequence |
TTACTTGTTTCCCATTTTTCAACCCTCGTTTCTAGGCAAAGGTGTCCAAATTATGCAGAC CCACAGAATCTAACAGATGTCTCTATATTCCTCCTCCTAGAAGTCTCAGGGGATCCAGAA CTGCAGCCAGTCCTTGCTGGGCTGTTCCTGTCCATGTGCCTGGTCACGGTGCTGGGGAAC CTGCTCATCATCCTGGCCATCAGCCCTGACTCCCACCTCCACACCCCCATGTACTTCTTC CTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATGATT GTGGACATCCAGTCTCACAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGATGTCT CTCTTTGCCATTTTTGGAGGCATGGAAGAGAGACATGCTCCTGAGTGTGATGGCCTATGA CTGGTTTGTAGCCATCTGTCACCCGCTATATCATTCACCATCATGAACCCGTGTTTCTGT GCCTTTCTAGTTTTGTTGTCTTTTTTTTTCTCAGTCTTTTAGACTCCCAGCTGCACAACT TGATTGCCTTACAAGTGACCTGCTTCAAGGATGTGGAAATTCCTAATTTCTTCTGTGACC CTTCTCAACTCTCCCATCTTGCATGTTGTGACACCTTCACCATTAACATAATCATGTATT TCCCTGCTGCCATATTTGGTTTTCTTCCCATCTTGGGGACCCTTTTCTCTTTCTCTAAAA TTGTTTCCTCCATTCTGAGGGTTTCTTCATCAGGTGGGAAGTATAAAGCCCTCTCCACCT GTGGGTCTCGCCTGTCAGTTGTTTGCTGAGTTTATGGAACAGGCGTTGGAGGGTACCTCA GTTCAGATGTGTCATCTTCCCCCAGAAAGGGTGCAGTGGCCTCAGTGATGTACACACTGG TCACCCCCATGCTGACCCCCTTCATCTACAGCCTGAGAAACAGGGATATGAAAGGTGTCC TGCGGCAGCCGCACGGCAGCACAGTC |
| Conceptual translation |
LLVSHFSTLVSRQRCPNYADPQNLTDVSIFLLLEVSGDPELQPVLAGLFLSMCLVTVLGN LLIILAISPDSHLHTPMYFFLSNLSLPDIGFTSTTVPKMIVDIQSHSRVISYAGCLTQMS LFAIFGGMEE\MLLSVMAYDWFVAICHPLYHS/IMNPCFCAFLVLL/FFFLSLLDSQ LHNLIALQVTCFKDVEIPNFFCDPSQLSHLACCDTFTINIIMYFPAAIFGFLPILGTLFS FSKIVSSILRVSSSGGKYKALSTCGSRLSVVCXYGTGVGGYLSSDVSSSPRKGAVASVM YTLVTPMLTPFIYSLRNRDMKGVLRQPHGSTV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 7 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 7 | 97,595,431 | 97,595,431 | SNP | A/G | rs60691739 (DbSNP) | |
| 7 | 97,595,527 | 97,595,527 | SNP | C/G | rs3175481 (DbSNP) | |
| 7 | 97,595,557 | 97,595,557 | SNP | C/A | rs3176053 (DbSNP) | |
| 7 | 97,595,580 | 97,595,580 | SNP | C/A | rs3175883 (DbSNP) | |
| 7 | 97,595,601 | 97,595,601 | SNP | A/G | rs7794912 (DbSNP) | |
| 7 | 97,595,611 | 97,595,611 | SNP | A/G | rs7794918 (DbSNP) | |
| 7 | 97,595,675 | 97,595,675 | SNP | G/T | rs13311913 (DbSNP) | |
| 7 | 97,595,678 | 97,595,678 | SNP | A/T | rs3178337 (DbSNP) | |
| 7 | 97,595,695 | 97,595,695 | SNP | T/C | rs3178336 (DbSNP) | |
| 7 | 97,595,696 | 97,595,696 | SNP | A/G | rs13311795 (DbSNP) | |
| 7 | 97,595,743 | 97,595,743 | SNP | C/G | rs3178335 (DbSNP) | |
| 7 | 97,595,747 | 97,595,747 | SNP | A/T | rs13311830 (DbSNP) | |
| 7 | 97,595,778 | 97,595,778 | SNP | A/G | rs13311835 (DbSNP) | |
| 7 | 97,595,783 | 97,595,783 | Del(1) | -/T | rs71108257 (DbSNP) | |
| 7 | 97,595,835 | 97,595,835 | SNP | T/C | rs1054436 (DbSNP) | |
| 7 | 97,595,856 | 97,595,856 | SNP | G/A | rs16875303 (DbSNP) | |
| 7 | 97,595,865 | 97,595,865 | SNP | A/C | rs13311882 (DbSNP) | |
| 7 | 97,595,904 | 97,595,904 | SNP | G/A | rs16875305 (DbSNP) | |
| 7 | 97,595,908 | 97,595,908 | SNP | C/G | rs13312035 (DbSNP) | |
| 7 | 97,595,920 | 97,595,920 | SNP | G/A | rs1133299 (DbSNP) | |
| 7 | 97,595,942 | 97,595,942 | SNP | C/T | rs2894158 (DbSNP) | |
| 7 | 97,595,945 | 97,595,945 | SNP | C/A | rs1054430 (DbSNP) | |
| 7 | 97,595,947 | 97,595,947 | SNP | C/G | rs55903636 (DbSNP) | |
| 7 | 97,595,968 | 97,595,968 | SNP | G/A | rs16875250 (DbSNP) | |
| 7 | 97,596,092 | 97,596,092 | SNP | A/T | rs3957046 (DbSNP) | |
| 7 | 97,966,289 | 97,966,289 | SNP | G/A | 1000GP (CEU) | |
| 7 | 97,966,299 | 97,966,299 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 7 | 97,966,630 | 97,966,630 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 7 | 97,966,635 | 97,966,635 | SNP | G/C | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 7 | 97,476,284 | 97,648,029 | CopyNumber | Variation_3691 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR7E38PandASNS.pApr07-unspliced | main_exon | CDS_partial | chr7 | 97,966,299 | 97,967,077 | - |
| 5UTR | chr7 | 97,967,077 | 97,967,223 | - | ||
| OR7E38PandASNS.sApr07 | main_exon | CDS_partial | chr7 | 97,966,418 | 97,966,977 | - |
| exon_5UTR | chr7 | 97,967,086 | 97,967,251 | - | ||
| exon_5UTR | chr7 | 97,969,770 | 97,969,845 | - | ||
| exon_5UTR | chr7 | 97,970,134 | 97,970,730 | - | ||
| exon_5UTR | chr7 | 97,971,924 | 97,971,967 | - | ||
| OR7E38PandASNS.vcApr07 | main_exon | CDS_partial | chr7 | 97,966,589 | 97,966,977 | - |
| exon_5UTR | chr7 | 97,969,770 | 97,969,845 | - | ||
| exon_5UTR | chr7 | 97,972,135 | 97,972,331 | - | ||
| OR7E38PandASNS.vfApr07 | main_exon | CDS_partial | chr7 | 97,966,406 | 97,966,977 | - |
| exon_5UTR | chr7 | 97,969,770 | 97,969,845 | - | ||
| exon_5UTR | chr7 | 97,972,135 | 97,972,344 | - | ||