OR7E39P Olfactory Receptor
| Gene Symbol | OR7E39P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | hg611, HsOR7.2.1P, ORL4085 |
| External Ids | HGNC: 8412 GeneBank: AF399377, NG_004294 ORDB: ORL4085 |
| Build #39 labels | OR7E39P, OR7E138P |
| Chromosomal location | 7:6,834,823-6,835,794 (-) |
| Cluster | 7@7 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E36P | 90.43% | 324 |
| OR7E37P | 90.4% | 323 |
| OR7E38P | 91.8% | 317 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E24 | 71% | 323 |
| Mouse | Or7e178 | 67% | 310 |
| Rat | Or7e173 | 65% | 306 |
| Cow | OR7E186 | 68% | 323 |
| Orang | OR7E15P | 87% | 320 |
| Orang | OR7E14P | 86% | 320 |
| Orang | OR7E31DP | 89% | 297 |
| Orang | OR7E12P | 84% | 312 |
| Horse | OR7E225 | 69% | 314 |
| Chimp | OR7E38P | 90% | 321 |
| Chimp | OR7E36P | 88% | 323 |
| Chimp | OR7E14P | 87% | 320 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | 201973_s_at |
Sequence information
| Nucleotide sequence |
TTGCAACCCTCTTTTCTAGGCAAAAGGTATCCAAACTATGCAGAGCCACAGAATCTAACA GATGTCTCTCTATTCCTTCTCCTAGAACTCTCAGGGGATCCAGAACTGCAGCTGGTCCTC GCTGGGCTGTTCCTGTCCATCTGCCTGGTCATGGTGCTGGGGAACCTGCTCATCATCCTG GCCATCAGCCCTGACTCCCACCTCCACACCCCCGTGTACTTCTTCCTCTCCAACCTGTCC TTGCCTGACATCAGTTTCACCTCCACCACAGTCCCCAAGATGATTGTGGACATCCAATCT CACAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGATGTCTCTCTTTGTCATTTTT GGAGGCATGGAAGAGAGGCATGCTCCTGAGTGTGATGGCCTATGACTGGTTTGTAGCCAT CTGTCACCCTCTATATCATTCAGCCATCATGAACCCGTGTTTCTGTGGCTTCCTAGTTTT GTTGTCTTTTTTTTTCTCAGTCTTTTAGATGCCCAGCTGCACAACTTGATTGCCTTACAA GTGACCTGCTTCAAGGATGTGGAAATTCCTAATTTCTTCTGTGACCCTTCTCAACTCCCC CATCTTGCATGTTGTGACACCTTCACCATTAACATAATCATGTATTTCCCTGCCGCCATA TTTGGTTTTCTTCCCATCTCGGGGACCCTTTTCTCTTACTCTAAAATTGTTTCCTCCATT CTGAGGGTTTCATCGTCAGGTGGGAGGTATAAAGCCCTCTCCACCTGTGGGTCTCACCTG TCAGTTGTTTGCTGAGTTTATGGAACAGGCGTTGGAGGGTACCTCAGTTCGGATGTGTCA TTTTCCCCCAGAAAGGGTGCAGTGGCCTCAGTGATGTACGCGGTTGTCACCCCCATGCTG AACCCCTTCGTCTACAGCCTGAGAAACAGGGATGTTAAAGGTGTCCTGCGGCGGCCACAC GGCAGCACAGTC |
| Conceptual translation |
LQPSFLGKRYPNYAEPQNLTDVSLFLLLELSGDPELQLVLAGLFLSICLVMVLGNLLIIL AISPDSHLHTPVYFFLSNLSLPDISFTSTTVPKMIVDIQSHSRVISYAGCLTQMSLFVIF GGMEE\MLLSVMAYDWFVAICHPLYHSAIMNPCFCGFLVLL/FFFLSLLDAQLHNLIA LQVTCFKDVEIPNFFCDPSQLPHLACCDTFTINIIMYFPAAIFGFLPISGTLFSYSKIVS SILRVSSSGGRYKALSTCGSHLSVVCXYGTGVGGYLSSDVSFSPRKGAVASVMYAVVTP MLNPFVYSLRNRDVKGVLRRPHGSTV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 7 | 6,875,118 | 6,875,119 | Del(2) | -/CT | rs56902949 (DbSNP) | |
| 7 | 6,875,116 | 6,875,117 | Del(2) | -/CT | rs34551370 (DbSNP) | |
| 7 | 6,874,714 | 6,874,714 | SNP | A/T | rs62442278 (DbSNP) | |
| 7 | 6,874,648 | 6,874,648 | SNP | C/G | rs13233326 (DbSNP) | |
| 7 | 6,875,423 | 6,875,423 | SNP | C/G | rs7778535 (DbSNP) | |
| 7 | 6,875,174 | 6,875,174 | SNP | C/G | rs4724861 (DbSNP) | |
| 7 | 6,875,278 | 6,875,278 | SNP | C/G | rs13234838 (DbSNP) | |
| 7 | 6,875,212 | 6,875,212 | SNP | C/T | rs4724863 (DbSNP) | |
| 7 | 6,874,691 | 6,874,691 | SNP | C/T | rs56962619 (DbSNP) | |
| 7 | 6,875,176 | 6,875,176 | SNP | C/T | rs4724862 (DbSNP) | |
| 7 | 6,874,489 | 6,874,489 | SNP | C/T | rs73333165 (DbSNP) | |
| 7 | 6,834,858 | 6,834,858 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 7 | 6,835,647 | 6,835,647 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 7 | 6,835,792 | 6,835,792 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 7 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 7 | 6,750,772 | 6,990,043 | InversionBreakpoint | Variation_0842 (DGV) |
| 7 | 6,764,583 | 6,977,214 | CopyNumber | Variation_2673 (DGV) |
| 7 | 6,687,733 | 7,773,841 | CopyNumber | Variation_8546 (DGV) |
| CopyNumber | 72 (Hasin) | |||
| 7 | 6,872,454 | 6,875,525 | CopyNumber | #112 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.