OR7E5P Olfactory Receptor
| Gene Symbol | OR7E5P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-12, OR11-156, HsOR11.11.38P, ORL3476 |
| External Ids | HGNC: 8435 GeneBank: AB065945, AF065865, AF399402, AK055955, BK004660, NG_002160 ORDB: ORL3476 |
| Build #39 labels | OR7E5P |
| Chromosomal location | 11:55,979,114-55,980,106 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E100P | 80.67% | 326 |
| OR7E108P | 76.44% | 331 |
| OR7E111P | 78.53% | 326 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E24 | 71% | 318 |
| Mouse | Or7e177 | 66% | 315 |
| Rat | Or7e173 | 64% | 307 |
| Cow | OR7E186 | 69% | 306 |
| Orang | OR7E100P | 80% | 316 |
| Horse | OR7E225 | 68% | 317 |
| Chimp | OR7E115P | 75% | 319 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DB322640 |
| mRNA | AK055955 |
| GNF Atlas2 | gnf1h05461_at |
Sequence information
| Nucleotide sequence |
CTTTTCTTCTCATGGTGTCCAAGTGACACAGAGCCACAGAATCTCACAGCTGTCTCAGAA TTCCTCCTCCTGGGACTCTCAGAGGATCCAGAACTGCAGCCCATCCTCGCTGGGCTCTTC CTGTCCATGTACCTGGTCACGGTGCTGGGGAACCTGCTCATTATCCTGGCCATCGGCTCT GACTCCCACCTCGACACCCCCATGTACTTCTTCCTCTCCAACCTGTCCTTGCCTGACATC GGTTTCACCTCGGCCACGGTCCCCAAGATGATTGAGGAGATGCAATCGCATAGCAGAGTC ATCTACCATGGGGACTGCCTGACACAGATGTCTTTCTTTGTCCTTTTTGCATGTAAGGAT GACATGATCCTGACTGTGATGGCCTATGACTGGTTTGTGGCCATCTGTCACCCCCTGAAC TACCCAGGCATCATGAATCCTCACCTCTGTGTCTTATTAGTTTTGGTGCCTTTTTTCCTT AGCCTGTTGGATTCCCAGCTGCACAATTTGATTGTGTTACAATTCATCTGCTTCAAGAAT GTGGAAATCTCTAATTTTTTCTGTGACCCGTTTCAACGTCTCAACCTTGCCTGTTCTGAC AGTGACATCAATAACATATACATATATTTAGATAGTACTATATTTGGTTTTCTTCGCATT TCAGGGATCCTTTTGTGTTACTATACAGTTGCCTTCCCCATTCTAAGAATTCCATCCTCA GATGGGAATTATAAAGCCTTCTCCACCTGAGGCTCTCGCCTGGCAGTTGTTTGCTTATTT TATGGAACAGGCATTGGCGTGTACCTGACTTCCGCTGTGTCATCATCCCCCAGGAATGAT GTGGTGGCGTCAGTAATGTACGCTGTGGTGGTCACCCCCATGCTGAACCCCTTCATCTGC AGCCTGAGAAACAGGGACATTCAAAGTGCCCTGTGGAGGCTGCACAGCAGAACAGTCTAA TCTCATGATCTGTTCCATCCTTTTTCTTGTGTG |
| Conceptual translation |
LFFSWCPSDTEPQNLTAVSEFLLLGLSEDPELQPILAGLFLSMYLVTVLGNLLIILAIGS DSHLDTPMYFFLSNLSLPDIGFTSATVPKMIEEMQSHSRVIYHGDCLTQMSFFVLFACKD DMILTVMAYDWFVAICHPLNYPGIMNPHLCVLLVLVPFFLSLLDSQLHNLIVLQFICFKN VEISNFFCDPFQRLNLACSDSDINNIYIYLDSTIFGFLRISGILLCYYTVAFPILRIPSS DGNYKAFSTXSRLAVVCLFYGTGIGVYLTSAVSSSPRNDVVASVMYAVVVTPMLNPFIC SLRNRDIQSALWRLHSRTVXHDLFHPFSCV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,746,603 | 55,746,603 | SNP | A/G | rs61896254 (DbSNP) | |
| 11 | 55,746,891 | 55,746,891 | SNP | A/G | rs7481466 (DbSNP) | |
| 11 | 55,747,136 | 55,747,136 | SNP | C/G | rs12099295 (DbSNP) | |
| 11 | 55,747,554 | 55,747,554 | SNP | C/G | rs66595819 (DbSNP) | |
| 11 | 55,747,013 | 55,747,013 | SNP | C/T | rs17527788 (DbSNP) | |
| 11 | 55,747,411 | 55,747,411 | SNP | C/T | rs61896255 (DbSNP) | |
| 11 | 55,746,636 | 55,746,636 | SNP | C/T | rs10897478 (DbSNP) | |
| 11 | 55,747,331 | 55,747,331 | SNP | C/T | rs4424688 (DbSNP) | |
| 11 | 55,979,127 | 55,979,127 | SNP | G/A | 1000GP (CEU) | |
| 11 | 55,979,160 | 55,979,160 | SNP | C/T | 1000GP (CEU) | |
| 11 | 55,979,415 | 55,979,415 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 55,979,537 | 55,979,537 | SNP | C/T | 1000GP (CEU) | |
| 11 | 55,979,660 | 55,979,660 | SNP | G/C | 1000GP (CEU) | |
| 11 | 55,979,935 | 55,979,935 | SNP | T/C | 1000GP (CEU) | |
| 11 | 55,980,078 | 55,980,078 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
| 11 | 55,710,709 | 55,787,839 | CopyNumber | Variation_1245 (DGV) |
| 11 | 55,689,863 | 55,849,156 | CopyNumber | Variation_2927 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,685,799 | 55,842,512 | CopyNumber | Variation_9189 (DGV) |
| 11 | 55,685,556 | 55,819,544 | CopyNumber | Variation_29912 (DGV), Variation_48846 (DGV) |
| 11 | 55,685,556 | 55,796,170 | CopyNumber | Variation_48845 (DGV) |
| 11 | 55,685,556 | 55,836,620 | CopyNumber | Variation_48847 (DGV) |
| 11 | 55,683,109 | 55,833,490 | CopyNumber | Variation_85786 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR7E5P.aApr07 | main_exon | 3UTR | chr11 | 55,978,703 | 55,979,114 | - |
| CDS_partial | chr11 | 55,979,114 | 55,980,077 | - | ||
| exon_5UTR | chr11 | 55,983,229 | 55,983,307 | - | ||
| exon_5UTR | chr11 | 55,985,678 | 55,985,931 | - | ||
| exon_5UTR | chr11 | 55,986,281 | 55,986,404 | - | ||