OR8C1P Olfactory Receptor
| Gene Symbol | OR8C1P1 (View this gene in GeneCards) |
| Family | 8 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | pDJ9j14, OR11-175, OR11-299, OR11-308, OR912-106, OR912-45, HsOR11.18.32P, ORL3586 |
| External Ids | HGNC: 8478 GeneBank: AF399350, BK004538, BK004717 ORDB: ORL3586 |
| Build #39 labels | OR8C3P, OR8C1P |
| Chromosomal location | 11:124,376,877-124,377,807 (-) |
| Cluster | 11@124 |
| Synteny | CLIC#29 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR8B3 | 65.26% | 308 |
| OR8B4 | 67.21% | 308 |
| OR8B8 | 66.12% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8C7 | 75% | 310 |
| Mouse | Or8c15 | 74% | 309 |
| Rat | Or8c15c | 74% | 309 |
| Cow | OR8C26 | 77% | 310 |
| Orang | OR8C1 | 96% | 287 |
| Horse | OR8C1B | 82% | 310 |
| Chimp | OR8B4P | 68% | 308 |
Sequence information
| Nucleotide sequence |
ATGGCTGTGGAAAATGACTCTTCAGTGACAAGAGTTTATTCTTTTGGGATTAACAGACCA GCCTGAGATCTAATTGCCCCTGTTTTTCCTGTTCTTGGTGAACTATATGACCACCATGGT GGGCAACTTGAGTTTAATTAATCTAATTTGCCTGAATTCACACCTTCACACTCCCATGTA TTTTTTCCTTTTCAATCTGTCCTTCATTGATCTCTGTTATTCATTTGTCTTTACCCCCAA AATGCTGATGAGCTTTATTTCAGAGAGGAACATCATCTCCTTTCCAGGATGCATAACTCA GCTCTTTTTCTTCTGCTTTTTTGTCCACTCTGAGTGCTATGTGCTGACAGCCATGGCCTA TGATCGCTATGTGGCCATCTGCAAACCCCTTCTGTACATGGTCACCACGTCCCCTCAGAT CTGTTCTCTACTGATGCTTGGTTCATATGTGATGGGGTTTGCTGGGGCCATGGTCCACAC AGAGTGTATGATGAAGCTCATCTTTTGTGACTCCAACGTCATCAACCATTACATGTGTGA CATCTTCCCACTGCTCCAGCTCTCCTGCAGCAGCACCTAGGCCAATGAGCTGGTGATGTC TGTTATTGTAGGCACAGTTGTTATAGTATCAAGCCTCATTATCTTAATCTCTTATGCTTT GATTCTTTTCAATATCCTTCACATGTCCTCAGCCGAGGGTTGGTTCAAAGCCATCGGTAC CTGTGGCTCCCACATAATAACTGTTGGCCTATTCTATGAATTTGGGCTGATCACTCATGT TAAGTTATCATCTGATTGGTATATGGGTCAGGGGAAGTTTCTCTCAGTGTTTTACACGAA TGTGGTACCCATGCTGAACCCCCTCATTTATAGCCTCAGGAACAAGGATGTCAAACTTGC TCTAAAGGAAACCCTAAATAAAATTACAAAC |
| Conceptual translation |
MAVENDSSVT\FILLGLTDQPEIXPLFFLFLVNYMTTMVGNLSLINLICLNSHLHTPM YFFLFNLSFIDLCYSFVFTPKMLMSFISERNIISFPGCITQLFFFCFFVHSECYVLTAMA YDRYVAICKPLLYMVTTSPQICSLLMLGSYVMGFAGAMVHTECMMKLIFCDSNVINHYMC DIFPLLQLSCSSTXNELVMSVIVGTVVIVSSLIILISYALILFNILHMSSAEGWFKAIG TCGSHIITVGLFYEFGLITHVKLSSDWYMGQGKFLSVFYTNVVPMLNPLIYSLRNKDVKL ALKETLNKITN Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 11 | 124,247,011 | 124,247,011 | SNP | A/G | rs17128899 (DbSNP) | |
| 11 | 124,247,075 | 124,247,075 | SNP | A/G | rs535252 (DbSNP) | |
| 11 | 124,247,136 | 124,247,136 | SNP | G/T | rs73023697 (DbSNP) | |
| 11 | 124,247,187 | 124,247,187 | SNP | A/G | rs536201 (DbSNP) | |
| 11 | 124,247,285 | 124,247,285 | SNP | C/T | rs58501818 (DbSNP) | |
| 11 | 124,247,361 | 124,247,361 | SNP | C/T | rs538032 (DbSNP) | |
| 11 | 124,377,179 | 124,377,179 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 124,377,291 | 124,377,291 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 124,377,465 | 124,377,465 | SNP | C/T | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 53 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.