OR8J1 Olfactory Receptor
| Gene Symbol | OR8J11 (View this gene in GeneCards) |
| Family | 8 |
| Subfamily | J |
| Pseudogene | No |
| CORP pseudogene probability score | |
| Aliases | OR11-183, HsOR11.11.62, ORL3447 |
| External Ids | HGNC: 14855 GeneBank: AB065748, AF399515, BK004340, NM_001005205 ORDB: ORL3447 |
| Build #39 labels | OR8J1 |
| Chromosomal location | 11:56,360,247-56,361,194 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR8J3 | 88.61% | 316 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8J3 | 82% | 310 |
| Mouse | Or8j3 | 84% | 316 |
| Rat | Or8j3 | 83% | 315 |
| Cow | OR8J3 | 82% | 316 |
| Cow | OR8J3F | 81% | 314 |
| Orang | OR5E1P | 53% | 309 |
| Horse | OR8J3G | 82% | 316 |
| Horse | OR8J3H | 81% | 316 |
| Horse | OR8J2P | 81% | 300 |
| Chimp | OR8J3 | 89% | 316 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC137067 |
Sequence information
| Nucleotide sequence |
ATGGCTCCTGAAAATTTCACCAGAGTCACTGAGTTTATTCTTACAGGTGTCTCTAGCTGT CCAGAGCTCCAGATTCCCCTCTTCCTGGTCTTTCTGGTGCTCTATGGGCTGACCATGGCA GGGAACCTGGGCATCATCACCCTCACCAGTGTTGACTCTCGACTTCAAACCCCCATGTAC TTTTTCCTGCAACATCTGGCTCTCATTAATCTTGGTAACTCTACTGTCATTGCCCCTAAA ATGCTGATTAACTTTTTAGTAAAGAAGAAAACTACCTCATTCTATGAATGTGCCACCCAA CTGGGAGGGTTCTTGTTCTTTATTGTATCGGAGGTAATCATGCTGGCTTTGATGGCCTAT GACCGCTATGTGGCTATTTGTAACCCTCTGCTGTACATGGTGGTGGTGTCTCGGCGGCTC TGCCTCCTGCTGGTCTCCCTCACATACCTCTATGGCTTTTCTACAGCTATTGTGGTTTCA TCTTATGTATTCTCTGTGTCTTATTGCTCTTCTAATATAATCAATCATTTTTACTGTGAT AATGTTCCTCTGTTAGCATTATCTTGCTCTGATACTTACTTACCAGAAACAGTTGTCTTT ATATCTGCAGCAACAAATGTGGTTGGTTCCTTGATTATAGTTCTAGTATCTTATTTCAAT ATTGTTTTGTCTATTTTAAAAATATGTTCATCAGAAGGAAGGAAAAAAGCCTTTTCTACC TGTGCTTCACATATGATGGCAGTCACAATTTTTTATGGGACATTGCTATTCATGTATGTG CAGCCCCGAAGTAACCATTCACTGGATACTGATGATAAGATGGCTTCTGTGTTTTACACG TTGGTAATTCCTATGCTGAATCCCTTGATCTACAGCCTGAGGAATAAGGATGTGAAGACT GCTCTACAGAGATTCATGACAAATCTGTGCTATTCCTTTAAAACAATG |
| Conceptual translation |
MAPENFTRVTEFILTGVSSCPELQIPLFLVFLVLYGLTMAGNLGIITLTSVDSRLQTPMY FFLQHLALINLGNSTVIAPKMLINFLVKKKTTSFYECATQLGGFLFFIVSEVIMLALMAY DRYVAICNPLLYMVVVSRRLCLLLVSLTYLYGFSTAIVVSSYVFSVSYCSSNIINHFYCD NVPLLALSCSDTYLPETVVFISAATNVVGSLIIVLVSYFNIVLSILKICSSEGRKKAFST CASHMMAVTIFYGTLLFMYVQPRSNHSLDTDDKMASVFYTLVIPMLNPLIYSLRNKDVKT ALQRFMTNLCYSFKTM Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,128,406 | 56,128,406 | NS | A/G | I/M | rs62001032 (DbSNP) |
| 11 | 56,128,081 | 56,128,081 | NS | A/G | Y/C | rs10896290 (DbSNP) |
| 11 | 56,128,062 | 56,128,062 | NS | A/T | M/L | rs7942730 (DbSNP) |
| 11 | 56,127,898 | 56,127,898 | NS | C/T | T/M | rs62001035 (DbSNP) |
| 11 | 56,127,829 | 56,127,829 | NS | G/T | G/V | rs7927015 (DbSNP) |
| 11 | 56,127,971 | 56,127,971 | NS | G/T | M/I | rs62001034 (DbSNP) |
| 11 | 56,127,746 | 56,127,746 | SYN | A/G | R/R | rs7942390 (DbSNP) |
| 11 | 56,128,524 | 56,128,524 | SYN | C/T | L/L | rs7928704 (DbSNP) |
| 11 | 56,128,226 | 56,128,226 | SYN | C/T | Y/Y | rs11823483 (DbSNP) |
| 11 | 56,128,113 | 56,128,113 | SYN | C/T | L/L | rs62001033 (DbSNP) |
| 11 | 56,360,605 | 56,360,605 | NS | A/G | Y/C | 1000GP (CEU, CHBJPT) |
| 11 | 56,361,048 | 56,361,048 | SYN | C/T | L/L | 1000GP (CEU, CHBJPT) |
| 11 | 56,360,586 | 56,360,586 | NS | A/T | M/L | 1000GP (CEU) |
| 11 | 56,360,930 | 56,360,930 | NS | A/G | I/M | 1000GP (CEU) |
| 11 | 56,360,270 | 56,360,270 | SYN | A/G | R/R | 1000GP (CEU, CHBJPT) |
| 11 | 56,360,353 | 56,360,353 | NS | G/T | G/V | 1000GP (CEU) |
| 11 | 100 | -100 | NS | T/C | M/T | 1000GP (YRI, YRI) |
| 11 | 100 | -100 | SYN | C/T | L/L | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 56,118,942 | 56,149,196 | CopyNumber | Variation_34979 (DGV) |
| 11 | 56,122,078 | 56,147,627 | CopyNumber | Variation_34980 (DGV) |
| CopyNumber | 9 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| G36V | V51A | M59T | I83M | N84H | M114L | Y120C | I228M | M285L | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | G | V | M | I | N | M | Y | I | M | 68.13 | 0.827 |
| 2 | G | V | M | I | N | M | C | I | M | 24.88 | 0.827 |
| 3 | V | V | M | I | N | L | Y | M | M | 4.22 | 0.637 |
| 4 | G | V | M | I | N | M | Y | I | L | 0.69 | 0.827 |
| 5 | G | V | T | I | N | M | Y | I | M | 0.46 | 0.975 |
| 6 | V | V | M | I | N | M | Y | I | M | 0.38 | 0.827 |
| 7 | G | V | M | I | N | M | Y | M | M | 0.38 | 0.827 |
| 8 | V | V | M | M | N | L | Y | M | M | 0.23 | 0.637 |
| 9 | G | A | M | I | N | M | Y | I | M | 0.15 | 0.827 |
| 10 | G | V | M | I | N | M | C | M | M | 0.08 | 0.827 |
| 11 | V | V | M | I | H | L | Y | M | M | 0.08 | 0.637 |
| 12 | G | V | M | I | N | L | C | M | M | 0.08 | 0.637 |
| 13 | G | V | M | M | N | M | Y | I | M | 0.08 | 0.827 |
| 14 | V | V | M | I | H | M | Y | M | M | 0.08 | 0.827 |
| 15 | V | V | M | I | N | M | Y | M | M | 0.08 | 0.827 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR8J1.aApr07-unspliced | main_exon | CDS | chr11 | 56,360,247 | 56,361,194 | + |
| 3UTR | chr11 | 56,361,194 | 56,361,197 | + | ||