OR8J3 Olfactory Receptor
| Gene Symbol | OR8J31 (View this gene in GeneCards) |
| Family | 8 |
| Subfamily | J |
| Pseudogene | No |
| CORP pseudogene probability score | 0.7 (pseudogene) |
| Aliases | OR11-173, HsOR11.11.48, ORL3329 |
| External Ids | HGNC: 15312 GeneBank: AB065841, AF399516, BK004346, NM_001004064 ORDB: ORL3329 |
| Build #39 labels | OR8J3 |
| Chromosomal location | 11:56,136,774-56,137,718 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR8J1 | 88.61% | 316 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8J2B | 80% | 315 |
| Mouse | Or8j3 | 84% | 315 |
| Mouse | Or8j3b | 81% | 313 |
| Rat | Or8j3 | 83% | 314 |
| Cow | OR8J3F | 81% | 313 |
| Orang | OR8B2 | 53% | 303 |
| Horse | OR8J3G | 82% | 315 |
| Horse | OR8J3H | 81% | 315 |
| Horse | OR8J2P | 81% | 299 |
| Chimp | OR8J1 | 88% | 315 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10850_at |
Sequence information
| Nucleotide sequence |
ATGGCTCCTGAAAATTTCACCAGGGTCACTGAGTTTATTCTCACAGGTGTCTCTAGCTGT CCAGAGCTCCAGATTCCCCTCTTCCTGGTCTTCCTAGTGCTCTATGTGCTGACCATGGCA GGGAACCTGGGCATCATCACCCTCACCAGTGTTGACTCTCGACTTCAAAACCCCATGTAC TTTTTCCTGAGACATCTAGCTATCATCAATCTTGGCAACTCTACTGTCATTGCCCCTAAA ATGCTGATGAACTTTTTAGTAAAGAAGAAAACTACCTCATTCTATGAATGTGCCACCCAA CTGGGAGGGTTCTTGTTCTTTATTGTATCGGAGGTAATGATGCTGGCTGTGATGGCCTAT GACCGCTATGTGGCCATTTGTAACCCTCTGCTCTACATGGTGGTGGTGTCTCGGCGGCTC TGCCTCCTGCTGGTGTCCCTCACATACCTCTATGGCTTTTCTACAGCTATTGTGGTTTCA CCTTGTATATTCTCTGTGTCTTATTGCTCTTCTAATATAATCAATCATTTTTACTGTGAT ATTGCACCTCTGTTAGCATTATCTTGCTCTGATACTTACATACCAGAAACAATAGTCTTT ATATCTGCAGCAACAAATTTGGTTTTTTCCATGATTACAGTTCTAGTATCTTATTTCAAT ATTGTTTTGTCCATTCTAAGGATACGTTCACCAGAAGGAAGGAAAAAAGCCTTTTCCACC TGCGCTTCGCATATGATAGCAGTCACGGTTTTCTATGGGACAATGCTATTTATGTATTTG CAGCCCCAAACCAACCACTCACTGGATACTGATAAGATGGCTTCTGTGTTTTACACATTG GTGATTCCTATGCTGAATCCCTTGATCTACAGCCTGAGGAATAATGATGTAAATGTTGCC TTAAAGAAATTCATGGAAAATCCATGTTACTCCTTTAAATCAATG |
| Conceptual translation |
MAPENFTRVTEFILTGVSSCPELQIPLFLVFLVLYVLTMAGNLGIITLTSVDSRLQNPMY FFLRHLAIINLGNSTVIAPKMLMNFLVKKKTTSFYECATQLGGFLFFIVSEVMMLAVMAY DRYVAICNPLLYMVVVSRRLCLLLVSLTYLYGFSTAIVVSPCIFSVSYCSSNIINHFYCD IAPLLALSCSDTYIPETIVFISAATNLVFSMITVLVSYFNIVLSILRIRSPEGRKKAFST CASHMIAVTVFYGTMLFMYLQPQTNHSLDTDKMASVFYTLVIPMLNPLIYSLRNNDVNVA LKKFMENPCYSFKSM Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | NS | A/C | D/E | 1000GP (YRI, YRI, YRI) |
| 11 | 100 | -100 | SYN | T/C | T/T | 1000GP (YRI) |
| 11 | 55,904,328 | 55,904,328 | SYN | A/G | I/I | rs12280262 (DbSNP) |
| 11 | 55,904,382 | 55,904,382 | NS | A/C | D/E | rs17150102 (DbSNP) |
| 11 | 55,904,439 | 55,904,439 | SYN | G/A | Y/Y | rs61743520 (DbSNP) |
| 11 | 55,904,573 | 55,904,573 | NS | A/C | F/V | rs1384094 (DbSNP) |
| 11 | 55,904,751 | 55,904,751 | SYN | C/T | T/T | rs1947923 (DbSNP) |
| 11 | 55,904,828 | 55,904,828 | NS | A/G | Y/H | rs11227321 (DbSNP) |
| 11 | 55,904,832 | 55,904,832 | SYN | A/G | D/D | rs7936390 (DbSNP) |
| 11 | 55,904,936 | 55,904,936 | NS | C/T | V/I | rs7937461 (DbSNP) |
| 11 | 55,905,005 | 55,905,005 | SYN | G/T | R/R | rs7926893 (DbSNP) |
| 11 | 55,905,025 | 55,905,025 | NS | G/T | T/N | rs1947924 (DbSNP) |
| 11 | 55,905,078 | 55,905,078 | NS | T/C | I/M | rs61742348 (DbSNP) |
| 11 | 55,905,099 | 55,905,099 | SYN | C/T | L/L | rs7927014 (DbSNP) |
| 11 | 56,136,906 | 56,136,906 | NS | A/C | D/E | 1000GP (CEU, CHBJPT) |
| 11 | 56,137,275 | 56,137,275 | SYN | T/C | T/T | 1000GP (CEU) |
| 11 | 56,137,352 | 56,137,352 | NS | A/G | Y/H | 1000GP (CEU) |
| 11 | 56,137,549 | 56,137,549 | NS | T/G | N/T | 1000GP (CEU) |
| 11 | 56,137,602 | 56,137,602 | NS | C/T | M/I | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 98 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| D271E | M258T | T205K | Y123H | N57T | M39I | L32V | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | D | M | T | Y | N | M | L | 81.57 | 0.827 |
| 2 | E | M | T | H | N | I | L | 9.68 | 0.757 |
| 3 | D | M | T | Y | T | M | L | 5.38 | 0.827 |
| 4 | D | T | T | Y | N | M | L | 2.23 | 0.827 |
| 5 | D | M | K | Y | N | M | L | 0.54 | 0.827 |
| 6 | D | M | T | Y | N | M | V | 0.31 | 0.827 |
| 7 | E | M | T | Y | N | I | L | 0.23 | 0.827 |
| 8 | D | M | T | H | N | I | L | 0.08 | 0.757 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR8J3.aApr07-unspliced | main_exon | 3UTR | chr11 | 56,136,771 | 56,136,774 | - |
| CDS | chr11 | 56,136,774 | 56,137,718 | - | ||