OR8X1P Olfactory Receptor
| Gene Symbol | OR8X1P1 (View this gene in GeneCards) |
| Family | 8 |
| Subfamily | X |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | |
| External Ids | HGNC: 31318 GeneBank: NG_004440 |
| Build #39 labels | OR8X1P |
| Chromosomal location | 11:124,404,233-124,405,101 (-) |
| Cluster | 11@124 |
| Synteny | CLIC#29 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR8C1P | 41.95% | 174 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8B1L | 49% | 108 |
| Mouse | Or8c14-ps | 43% | 132 |
| Cow | OR8AR1P | 47% | 110 |
| Orang | OR8X1CP | 90% | 122 |
| Horse | OR8C1B | 41% | 174 |
| Chimp | OR8C1P | 41% | 174 |
Sequence information
| Nucleotide sequence |
ATGGCAGTGGAAAATAACTCTTCGGTGACTGAATTTATCCTTGTGAGATTAACAAACTCC CGCTGCCCCAGTGTTTTATTCTTAATGTGGTCCCTGTGGGGAGAATTTGAACATAATTTT ATGTCCCTAAATTCTCACCTTCATACCCCCACACACTTTTTCCTCTTCACGCTATCCTTC ATTGATGTCTGCTATTCATTTGTCTGTACCACAAAAATTCCAATGGGCTTTATCTCAGAG AGGAACATCATCTCCTTTGTGGGATGGCCAACGTAGCTATATTTCTTTTGCATCTTTGTC AAAGAACCTAAAAATGGGGTCATTGTGGGAATAATGTTCTCAGCCAAGATGCTTGTAGCC GAGAGATAATGGACTAGTCGTTGATGTGAAACTAGAAAATGCACATGGCCCTAGAAAGGT CTGATTTTAGAATGGGATAAACAGGATCTGCTACAAAGAAACATTTAATCATATTCTTGT ATTACAGCGATTATTTCCAGAGATAGTGAGGCTGCAGAGCTTTGGGACAAGGTTCCTTAG CGAAGCAAGACACACTCTCTAGAATTGCACATGTACTTTAAAAAGTCTGTTACATATTAT AATATGTTTTTATATTTGGAAACAGAAAAAAATAAGTTATTTATATCACAAATCATAGAA AATGGATCTTTACAAAATCTTCATGTTTTGTGGGTTACTCACAAGAAAAATTTTCTCCGT CCATTTCTACTTCTCAAATGGTTCAAGGAAAAATGCTCCTTAAAGGATATATCTGATTCT GGAGAATGAGCTTACCTATGTGTGCAATTTTTATCTTTGTCAGAAGATACTACTACCTTC TGAAAAAGTTGAAAACACTGCTTTATAAG |
| Conceptual translation |
MAVENNSSVTEFILVRLTNSRCPSVLFLMWSLWGEFEHNFMSLNSHLHTPTHFFLFTLSF IDVCYSFVCTTKIPMGFISERNIISFVGWPTXYFFCIFVKEPKNGVIVGIMFSAKMLV/br/>CREIMDXLMXXMHMALERSDFRMGXGSATKKHLIIFLYYSD/FPEIVRLQSFGTR FLSEARHTLXCTCTLKSLLHIIICFYIWKQKKISYLYHKSXMDLYKIFMFCGLLTRKI FSVHFYFSNGS\KMLLKGYIXWRMSLPMCAIFIFVRRYYYLLKKLKTLLYK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | T/G | 1000GP (YRI, YRI, YRI) | |
| 11 | 124,274,787 | 124,274,787 | SNP | C/T | rs34389811 (DbSNP) | |
| 11 | 124,274,904 | 124,274,903 | Ins(1) | -/G | rs34592542 (DbSNP) | |
| 11 | 124,404,236 | 124,404,236 | SNP | A/G | 1000GP (CEU) | |
| 11 | 124,404,631 | 124,404,631 | SNP | T/C | 1000GP (CEU) | |
| 11 | 124,404,789 | 124,404,789 | SNP | T/C | 1000GP (CHBJPT) | |
| 11 | 124,404,891 | 124,404,891 | SNP | T/C | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 12 (Hasin) | |||
| 11 | 124,272,129 | 124,275,097 | Deletion | #233 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.