OR9H1P Olfactory Receptor
| Gene Symbol | OR9H1P1 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | H |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR1-40, HsOR1.5.11P, ORL3081 |
| External Ids | HGNC: 15038 GeneBank: AB065628, AY358215, BK004587, NG_004269 ORDB: ORL3081 |
| Build #39 labels | OR9H1P |
| Chromosomal location | 1:247,774,910-247,775,833 (+) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5AP1P | 55.19% | 308 |
| OR5AP2 | 55.78% | 303 |
| OR5AR1 | 54.1% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AY358215 |
| GNF Atlas2 | gnf1h10915_at |
Sequence information
| Nucleotide sequence |
ATGGTGAATTTTACACATGTCTCAGAATTTGTTCTACTTGGGTTCCAAGGGGGTCCCGGG ATGCAGGCTATGCTATTTCTGATTTTTCTGATCCTGTATGGCATAGCTGTGGTGGGAAAC CTTGGCATGATTGTAATTATCTGGGTAGATGCACACCTCCACACCCCAATGTATGCCTTC CTGCAAAGCCTTTCATTGTTGGACATCTGCTATTCCTCCACAATTGCACCCAGGGCTCTG GCGAACTCCATGCAAGAGGACCACACAATTTCCTTTGGCGGATGTGCTGCTCAGTTCTTT TTCTTGTCTCTCTTTGGTATCACAGAGGCTTTCCTCCTGGCTGCCATGGCCTATGACCGC TTCATCGCCATCTGCAACCCTCTTCTGTACTCTGTGAGCATGTCTCACCAGGTCTGTGTG CTGTTAATATCAGGATCCTACTTGTGGGGTGTAGTCAATGCCATTGCTCAAACAACCATG ACCTTCAGGTTGCCTTTCTGTGGGTCCAATGAGATCAACGACTTTTTCTGTGATGTTCCC CCACTCTTGTCCCTCTCATGTTCAGATACCTTTATAAACCAACTGGTTCTTCTTGGTTTA TGTGGCTCCATTATTGTCAGTACCTTTTTGATTGTCCTGGTCTCATACATTTACATCATC TCAACAATTCTGAGGATCCCGACCATGCAGGGACGCTAGAAAGCCTTCTCCACGTGCGCT TCCCACCTAACAGGAGTGTGCTTGTTTTTTGGTACTGTTTTCTTCATGTATGCACAACCC AGTGCCATCTTCTTCATGGAGCAAAGTAAAATAGTGTCCATATTCTACACTATGGTCATC CCCATGCTGAATCCCCTGATATACAGCCTGAGGAACAAAGAGGTCAAGCAGGCTCTGAGA CGGAGCATGCAGAAGCTGTCTTTG |
| Conceptual translation |
MVNFTHVSEFVLLGFQGGPGMQAMLFLIFLILYGIAVVGNLGMIVIIWVDAHLHTPMYAF LQSLSLLDICYSSTIAPRALANSMQEDHTISFGGCAAQFFFLSLFGITEAFLLAAMAYDR FIAICNPLLYSVSMSHQVCVLLISGSYLWGVVNAIAQTTMTFRLPFCGSNEINDFFCDVP PLLSLSCSDTFINQLVLLGLCGSIIVSTFLIVLVSYIYIISTILRIPTMQGRXAFSTCA SHLTGVCLFFGTVFFMYAQPSAIFFMEQSKIVSIFYTMVIPMLNPLIYSLRNKEVKQALR RSMQKLSL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 247,938,908 | 247,938,908 | rescued_nonsense | C/T | rs6587482 (DbSNP) | |
| 1 | 247,938,998 | 247,938,998 | SNP | A/G | rs12082855 (DbSNP) | |
| 1 | 247,938,905 | 247,938,905 | SNP | C/T | rs7555046 (DbSNP) | |
| 1 | 247,938,531 | 247,938,531 | SNP | C/T | rs58656522 (DbSNP) | |
| 1 | 247,938,580 | 247,938,580 | SNP | C/T | rs57468589 (DbSNP) | |
| 1 | 247,938,748 | 247,938,748 | SNP | C/T | rs6587481 (DbSNP) | |
| 1 | 247,938,268 | 247,938,268 | SNP | C/T | rs58519652 (DbSNP) | |
| 1 | 247,938,569 | 247,938,569 | SNP | C/T | rs34982143 (DbSNP) | |
| 1 | 247,774,930 | 247,774,930 | SNP | C/T | 1000GP (CEU) | |
| 1 | 247,775,229 | 247,775,229 | SNP | T/C | 1000GP (CEU) | |
| 1 | 247,775,267 | 247,775,267 | SNP | C/T | 1000GP (CEU) | |
| 1 | 247,775,278 | 247,775,278 | SNP | C/T | 1000GP (CEU) | |
| 1 | 247,775,446 | 247,775,446 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 1 | 247,775,603 | 247,775,603 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 247,775,606 | 247,775,606 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 1 | 247,775,810 | 247,775,810 | SNP | C/T | 1000GP (CEU) | |
| 1 | 247,774,963 | 247,774,963 | SNP | T/C | 1000GP (CHBJPT) | |
| 1 | 247,774,997 | 247,774,997 | SNP | C/A | 1000GP (CHBJPT) | |
| 1 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 247,753,334 | 248,322,316 | CopyNumber | Variation_2358 (DGV) |
| 1 | 247,714,585 | 248,277,146 | CopyNumber | Variation_3339 (DGV) |
| 1 | 247,074,430 | 248,328,835 | CopyNumber | Variation_6816 (DGV) |
| 1 | 247,753,207 | 248,376,070 | CopyNumber | Variation_8353 (DGV) |
| 1 | 247,849,473 | 248,277,638 | CopyNumber | Variation_48302 (DGV) |
| 1 | 247,849,473 | 248,285,441 | CopyNumber | Variation_48303 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR9H1P.aApr07-unspliced | main_exon | 5UTR | chr1 | 247,774,684 | 247,774,910 | + |
| CDS | chr1 | 247,774,910 | 247,775,833 | + | ||
| 3UTR | chr1 | 247,775,833 | 247,776,210 | + | ||
| exon_3UTR | chr1 | 247,783,379 | 247,783,690 | + | ||