Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR9H1P Olfactory Receptor

Gene Symbol OR9H1P1 (View this gene in GeneCards)
Family 9
Subfamily H
Pseudogene Yes
CORP pseudogene probability score
Aliases OR1-40, HsOR1.5.11P, ORL3081
External Ids HGNC: 15038   GeneBank: AB065628, AY358215, BK004587, NG_004269   ORDB: ORL3081   
Build #39 labels OR9H1P
Chromosomal location 1:247,774,910-247,775,833 (+)
Cluster 1@248
Synteny CLIC#5
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR5AP1P 55.19% 308
OR5AP2 55.78% 303
OR5AR1 54.1% 305

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length

Expression evidences

Source Accession
mRNA AY358215
GNF Atlas2 gnf1h10915_at

Sequence information

Nucleotide sequence ATGGTGAATTTTACACATGTCTCAGAATTTGTTCTACTTGGGTTCCAAGGGGGTCCCGGG
ATGCAGGCTATGCTATTTCTGATTTTTCTGATCCTGTATGGCATAGCTGTGGTGGGAAAC
CTTGGCATGATTGTAATTATCTGGGTAGATGCACACCTCCACACCCCAATGTATGCCTTC
CTGCAAAGCCTTTCATTGTTGGACATCTGCTATTCCTCCACAATTGCACCCAGGGCTCTG
GCGAACTCCATGCAAGAGGACCACACAATTTCCTTTGGCGGATGTGCTGCTCAGTTCTTT
TTCTTGTCTCTCTTTGGTATCACAGAGGCTTTCCTCCTGGCTGCCATGGCCTATGACCGC
TTCATCGCCATCTGCAACCCTCTTCTGTACTCTGTGAGCATGTCTCACCAGGTCTGTGTG
CTGTTAATATCAGGATCCTACTTGTGGGGTGTAGTCAATGCCATTGCTCAAACAACCATG
ACCTTCAGGTTGCCTTTCTGTGGGTCCAATGAGATCAACGACTTTTTCTGTGATGTTCCC
CCACTCTTGTCCCTCTCATGTTCAGATACCTTTATAAACCAACTGGTTCTTCTTGGTTTA
TGTGGCTCCATTATTGTCAGTACCTTTTTGATTGTCCTGGTCTCATACATTTACATCATC
TCAACAATTCTGAGGATCCCGACCATGCAGGGACGCTAGAAAGCCTTCTCCACGTGCGCT
TCCCACCTAACAGGAGTGTGCTTGTTTTTTGGTACTGTTTTCTTCATGTATGCACAACCC
AGTGCCATCTTCTTCATGGAGCAAAGTAAAATAGTGTCCATATTCTACACTATGGTCATC
CCCATGCTGAATCCCCTGATATACAGCCTGAGGAACAAAGAGGTCAAGCAGGCTCTGAGA
CGGAGCATGCAGAAGCTGTCTTTG
Conceptual translation MVNFTHVSEFVLLGFQGGPGMQAMLFLIFLILYGIAVVGNLGMIVIIWVDAHLHTPMYAF
LQSLSLLDICYSSTIAPRALANSMQEDHTISFGGCAAQFFFLSLFGITEAFLLAAMAYDR
FIAICNPLLYSVSMSHQVCVLLISGSYLWGVVNAIAQTTMTFRLPFCGSNEINDFFCDVP
PLLSLSCSDTFINQLVLLGLCGSIIVSTFLIVLVSYIYIISTILRIPTMQGRXAFSTCA
SHLTGVCLFFGTVFFMYAQPSAIFFMEQSKIVSIFYTMVIPMLNPLIYSLRNKEVKQALR
RSMQKLSL

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
1 247,938,908 247,938,908 rescued_nonsense C/T rs6587482 (DbSNP)
1 247,938,998 247,938,998 SNP A/G rs12082855 (DbSNP)
1 247,938,905 247,938,905 SNP C/T rs7555046 (DbSNP)
1 247,938,531 247,938,531 SNP C/T rs58656522 (DbSNP)
1 247,938,580 247,938,580 SNP C/T rs57468589 (DbSNP)
1 247,938,748 247,938,748 SNP C/T rs6587481 (DbSNP)
1 247,938,268 247,938,268 SNP C/T rs58519652 (DbSNP)
1 247,938,569 247,938,569 SNP C/T rs34982143 (DbSNP)
1 247,774,930 247,774,930 SNP C/T 1000GP (CEU)
1 247,775,229 247,775,229 SNP T/C 1000GP (CEU)
1 247,775,267 247,775,267 SNP C/T 1000GP (CEU)
1 247,775,278 247,775,278 SNP C/T 1000GP (CEU)
1 247,775,446 247,775,446 SNP T/C 1000GP (CEU, CHBJPT)
1 247,775,603 247,775,603 SNP C/T 1000GP (CEU, CHBJPT)
1 247,775,606 247,775,606 SNP T/C 1000GP (CEU, CHBJPT)
1 247,775,810 247,775,810 SNP C/T 1000GP (CEU)
1 247,774,963 247,774,963 SNP T/C 1000GP (CHBJPT)
1 247,774,997 247,774,997 SNP C/A 1000GP (CHBJPT)
1 100 -100 SNP T/C 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
1 247,753,334 248,322,316 CopyNumber Variation_2358 (DGV)
1 247,714,585 248,277,146 CopyNumber Variation_3339 (DGV)
1 247,074,430 248,328,835 CopyNumber Variation_6816 (DGV)
1 247,753,207 248,376,070 CopyNumber Variation_8353 (DGV)
1 247,849,473 248,277,638 CopyNumber Variation_48302 (DGV)
1 247,849,473 248,285,441 CopyNumber Variation_48303 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

AceView Gene Models

The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.

Accession Type Chr Start End Strand
OR9H1P.aApr07-unspliced main_exon 5UTR chr1 247,774,684 247,774,910 +
CDS chr1 247,774,910 247,775,833 +
3UTR chr1 247,775,833 247,776,210 +
exon_3UTR chr1 247,783,379 247,783,690 +