OR9K1P Olfactory Receptor
| Gene Symbol | OR9K1P1 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | K |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR12-4, HsOR12.5.1P, ORL3659 |
| External Ids | HGNC: 15338 GeneBank: AB065863, BK004576, NG_004285 ORDB: ORL3659 |
| Build #39 labels | OR9K1P |
| Chromosomal location | 12:55,115,533-55,116,471 (+) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9K2 | 72.76% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9K1 | 82% | 312 |
| Dog | OR9K7 | 81% | 302 |
| Mouse | Or9k7 | 76% | 321 |
| Rat | Or9k7 | 75% | 321 |
| Cow | OR9K1 | 89% | 313 |
| Cow | OR9K1B | 87% | 313 |
| Orang | OR9K1 | 96% | 313 |
| Horse | OR9K1 | 86% | 313 |
| Chimp | OR9K7 | 81% | 301 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529250 |
| GNF Atlas2 | gnf1h10911_at |
Sequence information
| Nucleotide sequence |
ATGGGTGACAAGGGAACAGGCAACCATTCAGATGTAACTGATTTCATTCTTGAAGGCTTC AGGGTCCGCCCAGAGTTCTACATTCTCCTCTTCTTCCTGTTCCTGCTGATCTATAGCATG GTTCTTTTGGGGAACATTAGTGTGATGACAATCATTGTAACTGATTCCCAGCTGAACACA CCAATGTATTTTTTTCTAGGCAACCTCTCCTTCATTGACGTCTCCTACTCCACTGTTATT GCTCCTAAAGCCATGGCCCACTTCCTGTCTGAAAAAAAGACAGTCTCTTTTGCAGGTTGT GTTGCCCAGTTATTCCTTTTTGCCCTGTTCATTGTAACAGAGGGGTTTGTCCTGGCAGCC ATGGCCTATGACCGCTTCAGTGCCATCTGCAATCCTCTTCTTCATAGTGTTCACATGTCA AGACGCCTCTGCACTCAGTTGGTTGCTGGTTCTTATTTCTGTGGCTGGGCCAGTTCCATC CTCCAAGTCAGTGTAACATTCTCAGTGTCCTTCTGTGCTTCCAGAGTCATTGCTCACTTC TACTGTGATTCTTATCAAATTGAAAAGATTTCCTGTTCTAATCTCTTTGTCAATAAGATG GTATCTCTGAGTTTGAGTGTCATCATTATTTTGCCTACAATTGTTGTTATTATAGTATCT TACCTGTATATTGTATCCTCAGTCTTGAAGATCCCCTCCAGTGAAGGGAGAAAGAAAGAC TTTTCCACTTGCAGCTCCCATCTGGGTGTTGTAAGTTTGCTCTAAGGGACTGTTTCCTTT GTGTACCTCACACCTCCAAGCAATCCTGAACTTCGCAAAGTGGCTTCAGTATTTTACATA TTGGTTACACCCATGTTAAACCCTCTGATCTACTCTCTAAGAAACAAAGATGTCAAAGAA GCTTTGAGAAAAATCCTGTGTAACAAAAAAGCTTTATCC |
| Conceptual translation |
MGDKGTGNHSDVTDFILEGFRVRPEFYILLFFLFLLIYSMVLLGNISVMTIIVTDSQLNT PMYFFLGNLSFIDVSYSTVIAPKAMAHFLSEKKTVSFAGCVAQLFLFALFIVTEGFVLAA MAYDRFSAICNPLLHSVHMSRRLCTQLVAGSYFCGWASSILQVSVTFSVSFCASRVIAHF YCDSYQIEKISCSNLFVNKMVSLSLSVIIILPTIVVIIVSYLYIVSSVLKIPSSEGRKKD FSTCSSHLGVVSLLXTVSFVYLTPPSNPELRKVASVFYILVTPMLNPLIYSLRNKDVKE ALRKILCNKKALS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 12 | 55,115,599 | 55,115,599 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 12 | 55,115,641 | 55,115,641 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 12 | 55,115,650 | 55,115,650 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 12 | 55,115,757 | 55,115,757 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 12 | 55,115,791 | 55,115,791 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 12 | 55,115,906 | 55,115,906 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 12 | 55,115,956 | 55,115,956 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 12 | 55,116,065 | 55,116,065 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 12 | 55,116,079 | 55,116,079 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 12 | 55,509,383 | 55,509,383 | SNP | C/T | rs11171275 (DbSNP) | |
| 12 | 55,509,425 | 55,509,425 | SNP | A/G | rs11171276 (DbSNP) | |
| 12 | 55,509,434 | 55,509,434 | SNP | A/G | rs11171277 (DbSNP) | |
| 12 | 55,509,541 | 55,509,541 | SNP | C/T | rs12313381 (DbSNP) | |
| 12 | 55,509,575 | 55,509,575 | SNP | A/C | rs10876706 (DbSNP) | |
| 12 | 55,509,687 | 55,509,687 | SNP | A/G | rs61958520 (DbSNP) | |
| 12 | 55,509,690 | 55,509,690 | SNP | A/G | rs11171278 (DbSNP) | |
| 12 | 55,509,696 | 55,509,696 | SNP | G/T | rs17116992 (DbSNP) | |
| 12 | 55,509,740 | 55,509,740 | SNP | C/T | rs11171279 (DbSNP) | |
| 12 | 55,509,849 | 55,509,849 | SNP | A/C | rs11171280 (DbSNP) | |
| 12 | 55,509,863 | 55,509,863 | SNP | A/G | rs11171281 (DbSNP) | |
| 12 | 55,509,981 | 55,509,981 | SNP | A/T | rs56336715 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 178 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.