OR9Q1 Olfactory Receptor
| Gene Symbol | OR9Q11 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | Q |
| Pseudogene | No |
| CORP pseudogene probability score | 0.31 (functional) |
| Aliases | HsOR11.12.7, ORL3278 |
| External Ids | HGNC: 14724 GeneBank: AB065734, AF399532, NM_001005212 ORDB: ORL3278 |
| Build #39 labels | OR9Q1 |
| Chromosomal location | 11:58,179,445-58,180,374 (+) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9Q2 | 73.46% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9Q4 | 77% | 310 |
| Mouse | Or9q1 | 83% | 309 |
| Rat | Or9q1 | 82% | 310 |
| Cow | OR9Q6 | 68% | 311 |
| Orang | OR9Q2 | 72% | 309 |
| Horse | OR9Q1B | 82% | 311 |
| Chimp | OR9Q2 | 73% | 309 |
Sequence information
| Nucleotide sequence |
ATGGCAGAGATGAACCTCACCTTGGTGACCGAGTTCCTCCTTATTGCATTCACTGAATAT CCTGAATGGGCACTCCCTCTCTTCCTCTTGTTTTTATTTATGTATCTCATCACCGTATTG GGGAACTTAGAGATGATTATTCTGATCCTCATGGATCACCAGCTCCACGCTCCAATGTAT TTCCTTCTGAGTCACCTCGCTTTCATGGACGTCTGCTACTCATCTATCACTGTCCCCCAG ATGCTGGCAGTGCTGCTGGAGCATGGGGCAGCTTTATCTTACACACGCTGTGCTGCTCAG TTCTTTCTGTTCACCTTCTTTGGTTCCATCGACTGCTACCTCTTGGCCCTCATGGCCTAT GACCGCTACTTGGCTGTGTGCCAGCCCCTGCTTTATGTCACCATCCTGACACAGCAGGCC CGCTTGAGTCTTGTGGCTGGGGCTTACGTTGCTGGTCTCATCAGTGCCTTGGTGCGGACA GTCTCAGCCTTCACTCTCTCCTTCTGTGGAACCAGTGAGATTGACTTTATTTTCTGTGAC CTCCCTCCTCTGTTAAAGTTGACCTGTGGGGAGAGCTACACTCAAGAAGTGCTGATTATT ATGTTTGCCATTTTTGTCATCCCTGCTTCCATGGTGGTGATCTTGGTGTCCTACCTGTTT ATCATCGTGGCCATCATGGGGATCCCTGCTGGAAGCCAGGCCAAGACCTTCTCCACCTGC ACCTCCCACCTCACTGCTGTGTCACTCTTCTTTGGTACCCTCATCTTCATGTACTTGAGA GGTAACTCAGATCAGTCTTCGGAGAAGAATCGGGTAGTGTCTGTGCTTTACACAGAGGTC ATCCCCATGTTGAATCCCCTCATCTACAGCCTGAGGAACAAGGAAGTGAAGGAGGCCCTG AGAAAAATTCTCAATAGAGCCAAGTTGTCC |
| Conceptual translation |
MAEMNLTLVTEFLLIAFTEYPEWALPLFLLFLFMYLITVLGNLEMIILILMDHQLHAPMY FLLSHLAFMDVCYSSITVPQMLAVLLEHGAALSYTRCAAQFFLFTFFGSIDCYLLALMAY DRYLAVCQPLLYVTILTQQARLSLVAGAYVAGLISALVRTVSAFTLSFCGTSEIDFIFCD LPPLLKLTCGESYTQEVLIIMFAIFVIPASMVVILVSYLFIIVAIMGIPAGSQAKTFSTC TSHLTAVSLFFGTLIFMYLRGNSDQSSEKNRVVSVLYTEVIPMLNPLIYSLRNKEVKEAL RKILNRAKLS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SYN | C/G | A/A | 1000GP (YRI) |
| 11 | 57,947,264 | 57,947,264 | SYN | C/G | A/A | rs11229273 (DbSNP) |
| 11 | 57,947,391 | 57,947,391 | NS | C/T | R/W | rs2513718 (DbSNP) |
| 11 | 57,947,392 | 57,947,392 | NS | G/T | R/L | rs12420738 (DbSNP) |
| 11 | 57,947,812 | 57,947,812 | Del(1) | -/C | rs34509298 (DbSNP) | |
| 11 | 58,179,567 | 58,179,567 | SYN | G/T | G/G | 1000GP (CEU) |
| 11 | 58,179,691 | 58,179,691 | NS | G/A | A/T | 1000GP (CEU) |
| 11 | 58,179,792 | 58,179,792 | SYN | C/G | A/A | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 229 (Hasin) | |||
| 11 | 57,912,509 | 57,948,750 | CopyNumber | Variation_4745 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| A83T | M283I | % Freq | CORP | |
|---|---|---|---|---|
| 1 | A | M | 97.70 | 0.418 |
| 2 | T | M | 2.07 | 0.418 |
| 3 | A | I | 0.23 | 0.418 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR9Q1.aApr07 | exon_5UTR | chr11 | 58,023,881 | 58,024,104 | + | |
| exon_5UTR | chr11 | 58,055,870 | 58,055,947 | + | ||
| main_exon | 5UTR | chr11 | 58,179,431 | 58,179,445 | + | |
| CDS | chr11 | 58,179,445 | 58,180,374 | + | ||
| 3UTR | chr11 | 58,180,374 | 58,181,564 | + | ||