OR13H1 Olfactory Receptor
| Gene Symbol | OR13H11 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | H |
| Pseudogene | No |
| CORP pseudogene probability score | 0.32 (functional) |
| Aliases | ORX1, HsORX.1.5 |
| External Ids | HGNC: 14755 GeneBank: AB065938, AF399633, AY284421-AY284452, BK004524, NM_001004486 |
| Build #39 labels | OR13H1 |
| Chromosomal location | X:131,544,074-131,544,997 (+) |
| Cluster | X@131b |
| Synteny | CLIC#48 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13C9 | 47.13% | 314 |
| OR13D1 | 47.39% | 306 |
| OR13D2P | 49.83% | 295 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13H2P | 77% | 308 |
| Mouse | Or13d1 | 49% | 311 |
| Rat | Or13c3 | 49% | 317 |
| Cow | OR13C7C | 48% | 317 |
| Orang | OR13H1P | 90% | 307 |
| Horse | OR13S2 | 54% | 307 |
| Chimp | OR13D2 | 50% | 306 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529233 |
Sequence information
| Nucleotide sequence |
ATGGCCATGGACAATGTCACAGCAGTGTTTCAGTTTCTCCTTATTGGCATTTCTAACTAT CCTCAATGGAGAGACACGTTTTTCACATTAGTGCTGATAATTTACCTCAGCACATTGTTG GGGAATGGATTTATGATCTTTCTTATTCACTTTGACCCCAACCTCCACACTCCAATCTAC TTCTTCCTTAGTAACCTGTCTTTCTTAGACCTTTGTTATGGAACAGCTTCCATGCCCCAG GCTTTGGTGCATTGTTTCTCTACCCATCCCTACCTCTCTTATCCCCGATGTTTGGCTCAA ACGAGTGTCTCCTTGGCTTTGGCCACAGCAGAGTGCCTCCTACTGGCTGCCATGGCCTAT GACCGTGTGGTTGCTATCAGCAATCCCCTGCGTTATTCAGTGGTTATGAATGGCCCAGTA TGTGTCTGCTTGGTTGCTACCTCATGGGGGACATCACTTGTGCTCACTGCCATGCTCATC CTATCCCTGAGGCTTCACTTCTGTGGGGCTAATGTCATCAACCATTTTGCCTGTGAGATT CTCTCCCTCATTAAGCTGACCTGTTCTGATACCAGCCTCAATGAATTTATGATCCTCATC ACCAGTATCTTCACCCTGCTGCTACCATTTGGGTTTGTTCTCCTCTCCTACATACGAATT GCTATGGCTATCATAAGGATTCGCTCACTCCAGGGCAGGCTCAAGGCCTTTACCACATGT GGCTCTCACCTGACCGTGGTGACAATCTTCTATGGGTCAGCCATCTCCATGTATATGAAA ACTCAGTCCAAGTCCTACCCTGACCAGGACAAGTTTATCTCAGTGTTTTATGGAGCTTTG ACACCCATGTTGAACCCCCTGATATATAGCCTGAGAAAAAAAGATGTTAAACGGGCAATA AGGAAAGTTATGTTGAAAAGGACA |
| Conceptual translation |
MAMDNVTAVFQFLLIGISNYPQWRDTFFTLVLIIYLSTLLGNGFMIFLIHFDPNLHTPIY FFLSNLSFLDLCYGTASMPQALVHCFSTHPYLSYPRCLAQTSVSLALATAECLLLAAMAY DRVVAISNPLRYSVVMNGPVCVCLVATSWGTSLVLTAMLILSLRLHFCGANVINHFACEI LSLIKLTCSDTSLNEFMILITSIFTLLLPFGFVLLSYIRIAMAIIRIRSLQGRLKAFTTC GSHLTVVTIFYGSAISMYMKTQSKSYPDQDKFISVFYGALTPMLNPLIYSLRKKDVKRAI RKVMLKRT Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| X | 130,678,287 | 130,678,287 | SYN | A/G | Q/Q | rs61748340 (DbSNP) |
| X | 130,678,467 | 130,678,467 | SYN | A/G | V/V | rs499030 (DbSNP) |
| X | 130,678,596 | 130,678,596 | SYN | C/G | L/L | rs17316625 (DbSNP) |
| X | 130,678,844 | 130,678,844 | NS | A/C | Y/S | rs655415 (DbSNP) |
| X | 130,678,940 | 130,678,940 | NS | A/G | Q/R | rs57328754 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 146 (Hasin) | |||
| X | 130,677,948 | 130,680,971 | Deletion | #316 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR13H1.aApr07-unspliced | main_exon | CDS | chrX | 131,544,074 | 131,544,997 | + |
| 3UTR | chrX | 131,544,997 | 131,545,000 | + | ||