OR1N1 Olfactory Receptor
| Gene Symbol | OR1N11 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | N |
| Pseudogene | No |
| CORP pseudogene probability score | 0.18 (functional) |
| Aliases | OR1-26, OR9-22, HsOR9.6.4, ORL254 |
| External Ids | HGNC: 8221 GeneBank: AB065719, AF399547, BK004446, NM_012363, U86216 ORDB: ORL254 |
| Build #39 labels | OR1N1, OR1N3 |
| Chromosomal location | 9:122,526,361-122,527,293 (-) |
| Cluster | 9@125 |
| Synteny | CLIC#21 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1E1 | 57.05% | 305 |
| OR1M1 | 56.31% | 309 |
| OR1N2 | 60.13% | 301 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1P1 | 60% | 310 |
| Mouse | Or1n1 | 85% | 310 |
| Rat | Or1n1 | 86% | 311 |
| Cow | OR1P1 | 60% | 306 |
| Orang | OR1P1 | 60% | 307 |
| Horse | OR1P1 | 62% | 307 |
| Chimp | OR1N2 | 60% | 302 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC156678 |
| GNF Atlas2 | gnf1h10674_at |
Sequence information
| Nucleotide sequence |
ATGGAAAACCAATCCAGCATTTCTGAATTTTTCCTCCGAGGAATATCAGCGCCTCCAGAG CAACAGCAGTCCCTCTTCGGAATTTTCCTGTGTATGTATCTTGTCACCTTGACTGGGAAC CTGCTCATCATCCTGGCCATTGGCTCTGACCTGCACCTCCACACCCCCATGTACTTTTTC TTGGCCAACCTGTCTTTTGTTGACATGGGTTTAACGTCCTCCACAGTTACCAAGATGCTG GTGAATATACAGACTCGGCATCACACCATCTCCTATACGGGTTGCCTCACGCAAATGTAT TTCTTTCTGATGTTTGGTGATCTAGACAGCTTCTTCCTGGCTGCCATGGCGTATGACCGC TATGTGGCCATTTGCCACCCCCTCTGCTACTCCACAGTCATGAGGCCCCAAGTCTGTGCC CTAATGCTTGCATTGTGCTGGGTCCTCACCAATATCGTTGCCCTGACTCACACGTTCCTC ATGGCTCGGTTGTCCTTCTGTGTGACTGGGGAAATTGCTCACTTTTTCTGTGACATCACT CCTGTCCTGAAGCTGTCATGTTCTGACACCCACATCAACGAGATGATGGTTTTTGTCTTG GGAGGCACCGTACTCATCGTCCCCTTTTTATGCATTGTCACCTCCTACATCCACATTGTG CCAGCTATCCTGAGGGTCCGAACCCGTGGTGGGGTGGGCAAGGCCTTTTCCACCTGCAGT TCCCACCTCTGCGTTGTTTGTGTGTTCTATGGGACCCTCTTCAGTGCCTACCTGTGTCCT CCCTCCATTGCCTCTGAAGAGAAGGACATTGCAGCAGCTGCAATGTACACCATAGTGACT CCCATGTTGAACCCCTTTATCTATAGCCTAAGGAACAAGGACATGAAGGGGGCCCTAAAG AGGCTCTTCAGTCACAGGAGTATTGTTTCCTCT |
| Conceptual translation |
MENQSSISEFFLRGISAPPEQQQSLFGIFLCMYLVTLTGNLLIILAIGSDLHLHTPMYFF LANLSFVDMGLTSSTVTKMLVNIQTRHHTISYTGCLTQMYFFLMFGDLDSFFLAAMAYDR YVAICHPLCYSTVMRPQVCALMLALCWVLTNIVALTHTFLMARLSFCVTGEIAHFFCDIT PVLKLSCSDTHINEMMVFVLGGTVLIVPFLCIVTSYIHIVPAILRVRTRGGVGKAFSTCS SHLCVVCVFYGTLFSAYLCPPSIASEEKDIAAAAMYTIVTPMLNPFIYSLRNKDMKGALK RLFSHRSIVSS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 100 | -100 | NS | C/T | R/Q | 1000GP (YRI, YRI) |
| 9 | 100 | -100 | SYN | G/A | S/S | 1000GP (YRI, YRI, YRI) |
| 9 | 122,526,614 | 122,526,614 | NS | C/T | R/Q | 1000GP (CHBJPT) |
| 9 | 122,526,754 | 122,526,754 | SYN | A/G | T/T | 1000GP (CEU) |
| 9 | 122,526,804 | 122,526,804 | SYN | A/G | L/L | 1000GP (CEU, CHBJPT) |
| 9 | 122,527,242 | 122,527,242 | NS | G/A | P/S | 1000GP (CEU, CHBJPT) |
| 9 | 122,527,243 | 122,527,243 | SYN | C/T | A/A | 1000GP (CEU) |
| 9 | 125,288,893 | 125,288,893 | NS | C/T | R/Q | rs58226717 (DbSNP) |
| 9 | 125,289,033 | 125,289,033 | SYN | A/G | T/T | rs41277122 (DbSNP) |
| 9 | 125,289,083 | 125,289,083 | SYN | A/G | L/L | rs16911867 (DbSNP) |
| 9 | 125,289,224 | 125,289,223 | Ins(1) | -/C | rs35753722 (DbSNP) | |
| 9 | 125,289,521 | 125,289,521 | NS | A/G | S/P | rs10818708 (DbSNP) |
| 9 | 125,289,522 | 125,289,523 | In-Del(2) | AT/C/GC/T | rs13287449 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 9 | 125,286,640 | 125,289,672 | CopyNumber | #115 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| R229H | R227Q | Y58N | P18S | % Freq | CORP | |
|---|---|---|---|---|---|---|
| 1 | R | R | Y | S | 54.99 | 0.340 |
| 2 | R | R | Y | P | 32.10 | 0.340 |
| 3 | R | Q | Y | S | 12.67 | 0.340 |
| 4 | R | R | N | S | 0.15 | 0.887 |
| 5 | H | R | Y | P | 0.08 | 0.340 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR1N1.aApr07-unspliced | main_exon | 3UTR | chr9 | 122,526,358 | 122,526,361 | - |
| CDS | chr9 | 122,526,361 | 122,527,293 | - | ||