Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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Chromosome:

OR1X5P Olfactory Receptor

Gene Symbol OR1X5P1 (View this gene in GeneCards)
Family 1
Subfamily X
Pseudogene Yes
CORP pseudogene probability score
Aliases HsOR5.3.1P
External Ids HGNC: 31245   GeneBank: NG_004630, NG_004631   
Build #39 labels
Chromosomal location 5:177,836,413-177,837,664 (-)
Cluster 5@177
Synteny CLIC#0
Remarks Disrupted by Alu repeat

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR1X1P 92.89% 396

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Orang OR1X7P 86% 161
Chimp OR1X7P 95% 215

Expression evidences

Source Accession
ESTs CD701441

Sequence information

Nucleotide sequence ATGTCCAGGGGTAAAGAGAATGAGACAGGAGTTGGCGAGTTCCTCTTGCTCGGCATCACC
AGTGACTCAGGGAAGCAGCAGGCCCTCTTCTGGCTCTTCCTGTGTATGCACTTAGTCACT
GAGGCTGGAAACACACCCATCATCCTGGGCATCGGCTCCAACCTTCGCCTGCACACCCCC
ATGTACTTCTTCACCCATCTCTCCTTTGTCAACATCTGCTTCATCACCAACCTGATCCCC
AAGCTCCTGGTCAACCATGTGGCAGGAACAGGGATGATCTCTATGGACGATCTCTTATCC
CCAGTGCCTGACTCAGATGTACTTCCTCATCTCCTTTGCCAACGTGGACACCTTTCTGCT
GGCCATCATGGCACTGGACCACTATGTGGCCATCTGCAGCGCCCTGCAGTACTGCTCCAT
CATCACCCCCGGCTCTGTCAGGGGCTGGCCGTGCTAGCGTGAGCAGGCTCCAGCCTCATC
TCCCTGGTCCACACGGTCATCATGAGCAGACTGGCCTTCTGCTCCTCCGCCCAGATTTCA
CACTTCTACCGTGACGCCTACCTGCTCATGAAGATTGCCTGCTCACATACATGACAATCA
GCATGTGTTCCTGGGGGCTGTGGTCCTGTTCCTGGCTCCCTGTGCACTCATCTTGGTCTC
CTACATCCGCATTGCTGCAGCCATCCTCCGGATTCCATCTCCTACAAGAAGGCGCAAGGC
ATGTTCCATATGTAGCTCCCACCTGTCTCTGGTCACCCTGTTCTATGGAACTGTCCTGGG
GATCTGCATATGACCCCCAGACTCCTTCTCAGCCCAGGACACCATAGCAACCATCATGTA
CACTGTGGTGACCTCTATGCTAAACCCCTTCATCTACAGTCTGATGAACAAGGAGGTCCA
GGAGGCCGTGAGAAGGCTCTTCAGTAGGGGCTCACACTCATCATGGTGC
Conceptual translation MSRGKENETGVGEFLLLGITSDSGKQQALFWLFLCMHLVTEAGNTPIILGIGSNLRLHTP
MYFFTHLSFVNICFITNLIPKLLVN\WQEQGXLFFFFETVLLCHPGWSAVAQSQLTAS
SASRVHAILLPQPPEXGLQVPATVPGXFFFFCIFSRDGVSPCXGWSPSPDLMITISY
PQCLTQMYFLISFANVDTFLLAIMALDHYVAICSALQYCSIITP/LCQGLAVLAXGSS
LISLVHTVIMSRLAFCSSAQISHFYRDAYLLMKIACSHTXSACVPGGC\LFLAPCALI
LVSYIRIAAAILRIPSPTRRRKACSICSSHLSLVTLFYGTVLGICIXPDSFSAQDTIAT
IMYTVVTSMLNPFIYSLMNKEVQEAVRRLFSRGSHSSWC

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
5 177,264,222 177,264,222 Del(1) -/A rs66704408 (DbSNP)
5 177,264,208 177,264,209 Del(2) -/AA rs72024936 (DbSNP)
5 177,264,386 177,264,385 Ins(2) -/AA rs72357889 (DbSNP)
5 177,264,381 177,264,380 Ins(2) -/AA rs72184524 (DbSNP)
5 177,264,385 177,264,384 Ins(2) -/AA rs57299378 (DbSNP)
5 177,264,236 177,264,236 SNP A/G rs12522055 (DbSNP)
5 177,263,769 177,263,769 SNP A/T rs7443880 (DbSNP)
5 177,263,717 177,263,717 SNP C/T rs7443871 (DbSNP)
5 177,264,170 177,264,170 SNP C/T rs62399480 (DbSNP)
5 177,263,666 177,263,666 SNP G/T rs7443843 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
5 177,261,414 177,264,765 Deletion #266 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.