OR4A19P Olfactory Receptor
| Gene Symbol | OR4A19P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-257, HsOR11.9.3P, ORL3637 |
| External Ids | HGNC: 15156 GeneBank: BK004790, NG_004239 ORDB: ORL3637 |
| Build #39 labels | OR4A19P |
| Chromosomal location | 11:49,920,411-49,921,313 (-) |
| Cluster | 11@50 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A47 | 90.61% | 309 |
| OR4A4P | 88.35% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A47FP | 81% | 308 |
| Dog | OR4A47C | 81% | 308 |
| Mouse | Or4a47 | 77% | 306 |
| Rat | Or4a47 | 77% | 307 |
| Cow | OR4A47D | 76% | 306 |
| Orang | OR4A47P | 89% | 309 |
| Horse | OR4A47 | 79% | 306 |
| Chimp | OR4A47 | 89% | 309 |
| Chimp | OR4A47H | 90% | 299 |
Sequence information
| Nucleotide sequence |
ATGGAGCTAAGGACCAATGTGACTGACTTTGTACTCTTGTGCTTCACGCAGAATCCAAAG GAGCAGAAAGTACTTTTTGTTATGTTCTTGCTCTTCTACATTTTGACCATGGTGGGAAAC CTGCTAATTGTAGTCACCGTAACTGTCAGTGAGACCCTGGGCTCACCAATGTACTTCTTT CTTGCTGGCTTATCATTTATAGATATCATTTATTCTTCATCCATTTCCCACAGATTGATT TCAGACTTGTTCTTTGGGAATAATTCCATATCCTTCCCATCTTGCTTGGCCCAGCTCTTT ACAGAGCACCTTTTTGGTGGGTCAGAGGTCTTTCTTCTGTTGGTGATGGCCTATGACCTT GCATTACTTGGTTATCATGAGACAATGGGTGTGTGTTTTGCTGCTGGTAGTGTCCTGGGT TGGAGGATTTCTGCACTCAGTATTTCAACTTAGTGTTATTTATGGGCTCCCATTCTGTGA CCTCAATGTCATTGATCATTTTTTCTGTGATATGCACCCTTTATTGAAACTGGTCTGTAC TGATACCCATGTTATTGGCCTCTTAGTGGTGGCCAATGGAGGACTAGGTTGCACTATTGT GTTTCTGCTCTTACTCATCTCTTATGGTGTCATCTGCACTCTCTAAAGAACCTTAGTCAG AAAGGGAGGTGAAAAGCCCTCTCAACCTGCAGTTCCCACATAACTGTGGTTGTTTTCTTC TTTGTTCCCTGTATTTTTATGTATGCTAGACCTGCTAGGACCTTCCCCATTGACAAATCA GTGAGTGTGTTTTATACAGTCATAACTCCAATGCTGAACCCTTTAATCTACACTCTGAGA AATTCTGAGATGACAAGTGCTATGAAGAAGCTCTGGAGAAGAGACTTCATATCAAGTAGT ACA |
| Conceptual translation |
MELRTNVTDFVLLCFTQNPKEQKVLFVMFLLFYILTMVGNLLIVVTVTVSETLGSPMYFF LAGLSFIDIIYSSSISHRLISDLFFGNNSISFPSCLAQLFTEHLFGGSEVFLLLVMAYDL \YLVIMRQWVCVLLLVVSWVGGFLHSVFQLSVIYGLPFCDLNVIDHFFCDMHPLLKLVC TDTHVIGLLVVANGGLGCTIVFLLLLISYGVIC/SLKNLSQKGRXALSTCSSHITVVV FFFVPCIFMYARPARTFPIDKSVSVFYTVITPMLNPLIYTLRNSEMTSAMKKLWRRDFIS SST Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 49,942,157 | 49,942,157 | SNP | A/C | rs72918332 (DbSNP) | |
| 11 | 49,942,580 | 49,942,580 | SNP | A/T | rs12364337 (DbSNP) | |
| 11 | 49,942,826 | 49,942,826 | SNP | C/A | rs61753941 (DbSNP) | |
| 11 | 49,942,197 | 49,942,197 | SNP | C/T | rs28526824 (DbSNP) | |
| 11 | 49,942,760 | 49,942,760 | SNP | G/T | rs12575701 (DbSNP) | |
| 11 | 49,920,605 | 49,920,605 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 49,920,645 | 49,920,645 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 49,921,028 | 49,921,028 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | C/A | 1000GP (YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 49,732,291 | 50,117,547 | CopyNumber | Variation_6919 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.