OR4A4P Olfactory Receptor
| Gene Symbol | OR4A4P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-107, HsOR11.10.6 |
| External Ids | HGNC: 15161 GeneBank: AB065752, AF399577, BK004379, NG_004331 |
| Build #39 labels | OR4A4 |
| Chromosomal location | 11:54,659,666-54,660,592 (-) |
| Cluster | 11@51 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A47 | 93.85% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A47FP | 83% | 308 |
| Dog | OR4A47 | 82% | 308 |
| Dog | OR4A47C | 81% | 308 |
| Mouse | Or4a47 | 78% | 306 |
| Rat | Or4a47 | 78% | 307 |
| Cow | OR4A47D | 77% | 306 |
| Orang | OR4A47P | 93% | 309 |
| Horse | OR4A47 | 82% | 306 |
| Horse | OR4A47L | 81% | 303 |
| Chimp | OR4A47 | 93% | 309 |
| Chimp | OR4A47H | 95% | 299 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h05421_at |
Sequence information
| Nucleotide sequence |
ATGGAGCCAAGGAAAAATGTGACTGACTTTGTCCTCTTGGGCTTCACACAGAATCCAAAG GAGCAGAAAGTACTTTTTGTTATGTTCTTGCTCTTCTACATTTTGACCATGGTGGGCAAC CTGCTCATTGTAGTGACCGTAACTGTCAGTGAGACCCTGGGCTCACCAATGTCCTTCTTT CTTGCTGGCTTAACATTTATAGATATCATTTATTCTTCATCCATTTCCCCCAGATTGATT TCAGACTTGTTCTTTGGGAATAATTCCATATCCTTCCAATCTTTCATGGCCCAGCTCTTT ATCGAGCACCTTTTTGGTGGGTCAGAGGTCTTTCTCCTGTTGGTGATGGCCTATGACCGC TATGTGGCCATCTGTAAGCCCTTGCATTATTTGGTTATCATGAGACAATGGGTGTGTGTT TTGCTGCTGGTAGTGTCCTGGGTTGGAGGATTTCTGCAATCAGTATTTCAACTTAGCATT ATTTATGGGCTCCCATTCTGTGGCCCCAATGTCATTGATCATTTTTTCTGTGACATGTAT CCCTTATTGAAACTGGCCTGCACTGACACCCATGTTATTGGCCTCTTAGTGGTGGCCAAT GGAGGACTGTCTTGCACTATTGCGTTTCTGCTCTTACTCATCTCTTATGGTGTCATCCTG CACTCTCTAAAGAAACTTAGTCAGAAAGGGAGGCAAAAAGCCCACTCAACCTGCAGTTCC CACATCACTGTGGTTGTCTTCTTCTTTGTTCCTTGTATTTTTATGTGTGCTAGACCTGCT AGGACCTTCTCCATTGACAAATCAGTGAGTGTGTTTTATACAGTCATAACCCCAATGCTG AACCCCTTAATCTACACTCTGAGAAATTCTGAGATGACAAGTGCTATGAAGAAGCTTTAG AGCAGAGACCTCATATCAAGTAGTACA |
| Conceptual translation |
MEPRKNVTDFVLLGFTQNPKEQKVLFVMFLLFYILTMVGNLLIVVTVTVSETLGSPMSFF LAGLTFIDIIYSSSISPRLISDLFFGNNSISFQSFMAQLFIEHLFGGSEVFLLLVMAYDR YVAICKPLHYLVIMRQWVCVLLLVVSWVGGFLQSVFQLSIIYGLPFCGPNVIDHFFCDMY PLLKLACTDTHVIGLLVVANGGLSCTIAFLLLLISYGVILHSLKKLSQKGRQKAHSTCSS HITVVVFFFVPCIFMCARPARTFSIDKSVSVFYTVITPMLNPLIYTLRNSEMTSAMKKLXbr/>SRDLISSST Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI) | |
| 11 | 51,459,004 | 51,459,004 | SNP | A/C | rs5009057 (DbSNP) | |
| 11 | 51,459,057 | 51,459,057 | SNP | A/G | rs5009058 (DbSNP) | |
| 11 | 51,459,155 | 51,459,155 | SNP | G/T | rs4993984 (DbSNP) | |
| 11 | 51,459,181 | 51,459,181 | SNP | C/T | rs5009059 (DbSNP) | |
| 11 | 51,459,193 | 51,459,193 | SNP | A/C | rs4993983 (DbSNP) | |
| 11 | 51,459,256 | 51,459,256 | SNP | A/G | rs4993982 (DbSNP) | |
| 11 | 51,459,299 | 51,459,299 | SNP | A/G | rs4993981 (DbSNP) | |
| 11 | 51,459,304 | 51,459,304 | SNP | G/T | rs4993980 (DbSNP) | |
| 11 | 51,459,330 | 51,459,330 | SNP | A/C | rs4993979 (DbSNP) | |
| 11 | 51,459,369 | 51,459,369 | SNP | C/T | rs4993978 (DbSNP) | |
| 11 | 51,459,421 | 51,459,421 | SNP | A/T | rs4993977 (DbSNP) | |
| 11 | 51,459,441 | 51,459,441 | SNP | G/T | rs5027926 (DbSNP) | |
| 11 | 54,659,851 | 54,659,851 | SNP | A/G | 1000GP (CEU) | |
| 11 | 54,660,222 | 54,660,222 | SNP | G/A | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 51,192,824 | 51,563,636 | CopyNumber | Variation_8689 (DGV) |
| 11 | 51,228,146 | 51,525,878 | CopyNumber | Variation_48823 (DGV) |
| 11 | 51,372,036 | 51,529,002 | CopyNumber | Variation_53111 (DGV) |
| 11 | 51,459,106 | 51,459,263 | Del(-16) | #16(modil) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.