OR4D9 Olfactory Receptor
Gene Symbol | OR4D91 (View this gene in GeneCards) |
Family | 4 |
Subfamily | D |
Pseudogene | No |
CORP pseudogene probability score | 0.2 (functional) |
Aliases | OR11-253, HsOR11.13.11, ORL3412 |
External Ids | HGNC: 15178 GeneBank: AB065861, BK004309, NM_001004711 ORDB: ORL3412 |
Build #39 labels | OR4D9 |
Chromosomal location | 11:59,514,913-59,515,854 (+) |
Cluster | 11@59a |
Synteny | CLIC#27 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR4D10 | 79.35% | 310 |
OR4D11 | 82.26% | 310 |
OR4D8P | 77.81% | 302 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR4D9D | 85% | 310 |
Dog | OR4D11 | 84% | 305 |
Dog | OR4D9B | 82% | 310 |
Mouse | Or4d10c | 83% | 307 |
Mouse | Or4d11 | 81% | 310 |
Mouse | Or4d10 | 82% | 305 |
Rat | Or4d10c | 83% | 307 |
Rat | Or4d10 | 82% | 308 |
Rat | Or4d11 | 81% | 310 |
Cow | OR4D9D | 82% | 310 |
Cow | OR4D11 | 80% | 308 |
Orang | OR4D9P | 95% | 307 |
Horse | OR4D9K | 85% | 310 |
Horse | OR4D11 | 84% | 308 |
Chimp | OR4D11 | 82% | 310 |
Expression evidences
Source | Accession |
---|---|
GNF Atlas2 | gnf1h02110_at |
Sequence information
Nucleotide sequence |
ATGGATCAGAGAAATTACACCAGAGTGAAAGAATTTACCTTCCTGGGAATTACTCAGTCC CGAGAACTGAGCCAGGTCTTATTTACCTTCCTGTTTTTGGTGTACATGACAACTCTAATG GGAAACTTCCTCATCATGGTTACAGTTACCTGTGAATCTCACCTTCATACGCCCATGTAC TTCCTGCTCCGCAACCTGTCTATTCTTGACATCTGCTTTTCCTCCATCACAGCTCCTAAG GTCCTGATAGATCTTCTATCAGAGACAAAAACCATCTCCTTCAGTGGCTGTGTCACTCAA ATGTTCTTCTTCCACCTTCTGGGGGGAGCAGACGTTTTTTCTCTCTCTGTGATGGCGTTT GACCGCTATATAGCCATCTCCAAGCCCCTGCACTATATGACCATCATGAGTAGGGGGCGA TGCACAGGCCTCATCGTGGCTTCCTGGGTGGGGGGCTTTGTCCACTCCATAGCGCAGATT TCTCTATTGCTCCCACTCCCTTTCTGTGGACCCAATGTTCTTGACACTTTCTACTGCGAT GTCCCCCAGGTCCTCAAACTTGCCTGCACTGACACCTTCACTCTGGAGCTCCTGATGATT TCAAATAATGGGTTAGTCAGTTGGTTTGTATTCTTCTTTCTCCTCATATCTTACACGGTC ATCTTGATGATGCTGAGGTCTCACACTGGGGAAGGCAGGAGGAAAGCCATCTCCACCTGC ACCTCCCACATCACCGTGGTGACCCTGCATTTCGTGCCCTGCATCTATGTCTATGCCCGG CCCTTCACTGCCCTCCCCACAGACACTGCCATCTCTGTCACCTTCACTGTCATCTCCCCT TTGCTCAATCCTATAATTTACACGCTGAGGAATCAGGAAATGAAGTTGGCCATGAGGAAA CTGAAGAGACGGCTAGGACAATCAGAAAGGATTTTAATTCAA |
Conceptual translation |
MDQRNYTRVKEFTFLGITQSRELSQVLFTFLFLVYMTTLMGNFLIMVTVTCESHLHTPMY FLLRNLSILDICFSSITAPKVLIDLLSETKTISFSGCVTQMFFFHLLGGADVFSLSVMAF DRYIAISKPLHYMTIMSRGRCTGLIVASWVGGFVHSIAQISLLLPLPFCGPNVLDTFYCD VPQVLKLACTDTFTLELLMISNNGLVSWFVFFFLLISYTVILMMLRSHTGEGRRKAISTC TSHITVVTLHFVPCIYVYARPFTALPTDTAISVTFTVISPLLNPIIYTLRNQEMKLAMRK LKRRLGQSERILIQ Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 59,282,861 | 59,282,861 | NS | A/G | Q/R | rs17501584 (DbSNP) |
11 | 59,283,310 | 59,283,310 | NS | C/G | Q/E | rs12794170 (DbSNP) |
11 | 59,283,309 | 59,283,309 | SYN | A/G | S/S | rs12796451 (DbSNP) |
11 | 59,515,388 | 59,515,388 | NS | A/G | Q/R | 1000GP (CEU) |
11 | 100 | -100 | SYN | G/A | K/K | 1000GP (YRI, YRI, YRI) |
11 | 100 | -100 | NS | C/T | T/I | 1000GP (YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
R64C | S75A | T89I | Q159R | T192S | T219M | C254S | R304W | L305P | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | R | S | T | Q | T | T | C | R | L | 93.09 | 0.285 |
2 | R | S | I | Q | S | T | C | R | P | 2.84 | 0.285 |
3 | R | S | T | R | T | T | C | R | L | 1.69 | 0.285 |
4 | R | A | T | Q | T | T | C | R | L | 0.84 | 0.285 |
5 | R | S | T | Q | T | M | C | R | L | 0.69 | 0.285 |
6 | R | S | T | Q | T | T | S | R | L | 0.38 | 0.285 |
7 | C | S | T | Q | T | T | C | R | L | 0.23 | 0.285 |
8 | R | S | T | Q | T | T | C | W | L | 0.15 | 0.285 |
9 | R | S | T | Q | S | M | C | R | P | 0.08 | 0.285 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR4D9.aApr07-unspliced | main_exon | CDS | chr11 | 59,514,913 | 59,515,854 | + |
3UTR | chr11 | 59,515,854 | 59,515,857 | + |