Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR4E1P Olfactory Receptor

Gene Symbol OR4E1P1 (View this gene in GeneCards)
Family 4
Subfamily E
Pseudogene Yes
CORP pseudogene probability score
Aliases OR14-43, AE000658, HsOR14.2.6P, ORL3717
External Ids HGNC: 8296   GeneBank: AB065562, AF399450, BK004671, NG_004135   ORDB: ORL3717   
Build #39 labels OR4E1P
Chromosomal location 14:21,669,991-21,670,935 (-)
Cluster 14@22b
Synteny CLIC#35
Remarks Segregating Pseudo Gene, a polymorphism of 2 bp insertion (AC) at positions 584-585

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR4E2 63.16% 304

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR4E1 85% 316
Mouse Or4e1 86% 312
Rat Or4e1 87% 312
Cow OR4E1 88% 316
Orang OR4E1 96% 316
Horse OR4E1 89% 316
Chimp OR4E1 97% 316

Sequence information

Nucleotide sequence ATGGAAGAGGCCATCCTACTCAATCAAACTTCTTTAGTGACATATTTTCGGCTTAGAGGT
TTATCTGTAAATCATAAGGCACGGATAGCTATGTTTTCCATGTTCCTCATTTTTTATGTC
CTGACACTGATTGGGAATGTTCTCATTGTCATAACTATTATCTATGACCACCGGCTCCAT
ACTCCCATGTATTTCTTCCTCAGCAACCTGTCCTTTATTGATGTCTGCCACTCCACTGTC
ACTGTCCCCAAGATGCTGAGAGACGTGTGGTCAGAGGAAAAGCTCATCTCTTTTGATGCC
TGTGTGACCCAGATGTTCTTCCTGCACCTCTTTGCCTGCACAGAGATCTTCCTCCTCACC
GTCATGGCCTATGATCGGTATGTGGCCATCTGTAAACCCCTGCAGTACATGATAGTGATG
AACTGGAAGGTATGTGTGCTGCTGGCTGTGGCCCTCTGGACAGGAGGGACCATCCACTCC
ATAGCCCTCACCTCCCTTACCATCAAGCTGCCCTACTGTGGTCCTGATGAGATTGACAAC
TTCTTCTGTGATGTACCTCAGGTGATCAAGCTGGCCTGCATTGACACACCCACGTCCTTG
AGATCCTCATTGTCTCCAACAGTGGATTGATCTCCGTGGTCTGTTTTGTGGTCCTGGTGG
TGTCCTACGCAGTCATCCTGGTGAGTCTGAGGCAGCAGATCTCCAAGGGCAAGTGGAAGG
CCCTGTCCACCTGTGCAGCCCATCTCACTGTAGTTACACTGTTCCTGGGACACTGCATCT
TCATCTATTCCCGCCCATCCACCAGCCTCCCAGAGGACAAGGCAGTATCTGTGTTTTTCA
CTGCAGTCACCCCCCTGCTGAACCCCATTATCTATACCCTTAGGAATGAAGAAATGAAGA
GTGCCTTAAACAAGTTAGTGGGGAGAAAAGAGAGAAAAGAAGAAAAA
Conceptual translation MEEAILLNQTSLVTYFRLRGLSVNHKARIAMFSMFLIFYVLTLIGNVLIVITIIYDHRLH
TPMYFFLSNLSFIDVCHSTVTVPKMLRDVWSEEKLISFDACVTQMFFLHLFACTEIFLLT
VMAYDRYVAICKPLQYMIVMNWKVCVLLAVALWTGGTIHSIALTSLTIKLPYCGPDEIDN
FFCDVPQVIKLACIDTP/VLEILIVSNSGLISVVCFVVLVVSYAVILVSLRQQISKGKW
KALSTCAAHLTVVTLFLGHCIFIYSRPSTSLPEDKAVSVFFTAVTPLLNPIIYTLRNEEM
KSALNKLVGRKERKEEK

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
14 100 -100 SNP C/T 1000GP (YRI, YRI, YRI, YRI, YRI)
14 21,670,115 21,670,115 SNP G/A 1000GP (CEU, CHBJPT)
14 21,670,224 21,670,224 SNP A/G 1000GP (CEU, CHBJPT)
14 21,670,234 21,670,334 SNP A/C 1000GP (YRI)
14 21,670,262 21,670,262 SNP A/T 1000GP (YRI)
14 21,670,334 21,670,334 SNP A/C 1000GP (CEU)
14 21,670,341 21,670,341 SNP G/T 1000GP (CEU, CHBJPT, YRI)
14 21,670,852 21,670,852 SNP C/G 1000GP (CHBJPT)
14 21,670,854 21,670,854 SNP G/A 1000GP (CEU, CHBJPT)
14 22,138,228 22,138,228 SNP C/T rs73588741 (DbSNP)
14 22,138,269 22,138,269 SNP G/T rs17109034 (DbSNP)
14 22,138,328 22,138,328 SNP A/G rs7144135 (DbSNP)
14 22,138,352 22,138,352 SNP G/T rs61974769 (DbSNP)
14 22,138,437 22,138,437 SNP A/G rs970025 (DbSNP)
14 22,138,475 22,138,475 SNP A/T rs17109038 (DbSNP)
14 22,138,547 22,138,547 SNP A/C rs12883831 (DbSNP)
14 22,138,554 22,138,554 SNP G/T rs10143044 (DbSNP)
14 22,138,562 22,138,563 Del(2) -/GT rs5807088 (DbSNP)
14 22,138,565 22,138,566 Del(2) -/TG rs3035516 (DbSNP)
14 22,138,566 22,138,567 Del(2) -/GT rs34586214 (DbSNP)
14 22,138,886 22,138,886 SNP C/T rs60080686 (DbSNP)
14 22,139,067 22,139,067 SNP C/G rs72686097 (DbSNP)
14 22,139,069 22,139,069 SNP A/G rs72686098 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
14 21,931,624 22,169,502 CopyNumber Variation_5318 (DGV)
14 22,136,204 22,139,250 CopyNumber #149 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.