OR4F13P Olfactory Receptor
| Gene Symbol | OR4F13P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | F |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR15.2.4P, ORL3162 |
| External Ids | HGNC: 15076 GeneBank: AB065564, NG_004357 ORDB: ORL3162 |
| Build #39 labels | OR4F13P |
| Chromosomal location | 15:101,848,645-101,849,581 (+) |
| Cluster | 15@102 |
| Synteny | CLIC#32 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4F14P | 67.97% | 306 |
| OR4F15 | 68.39% | 310 |
| OR4F6 | 69.03% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4F63 | 66% | 312 |
| Mouse | Or4f56 | 78% | 311 |
| Rat | Or4f56 | 79% | 300 |
| Cow | OR4F13 | 81% | 310 |
| Orang | OR4F6P | 70% | 310 |
| Horse | OR4F13 | 81% | 312 |
| Chimp | OR4F6 | 69% | 310 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AY792621 |
Sequence information
| Nucleotide sequence |
ATGAATAGGGACAACCAGTCTGTGGTGTCTGAATTCGTGTTGCTGGGACTCTCAAATTCT TGGGAGACTCAAGATTTTTCTTTTTTGCTTTTCTTGTCTTTTCTATGTGTCCGGTGTGAT GGCAAACCTCATTGTAGTGGTCACTGTAACCTCTGACCCTTACTTGCACTCCTCCTTGTA TATTTTGCTGGCCAACCTCTCTGTCATTGATCTCACATTTTGCTCCATTGCAGCACGCAA GATGATTTGTGATATTTTCAGGAAACAGAAAGTCATTTCCTTTTGGGGCTGTGTAGCTCA GATCTTCTTTAGCCATGCTGTTGGGGGCACTGAGATGGTGCTGCTCATAGCCATGGCCTT TGACAGATATGTTGCCGTATGTAAGCCCCTTCACTACCTGACCATCATGCATCCAAGAAT GTGCATTTTGATTCTAGTGGCTTCCTGGGCCATTGGTCTCATTCACTCATTGGTCCAATT GTCTTTTGTAGTAAACTTGCCCTTCTGTGGCCCTAATGTGTTGGACAGCTTTTACTGTGA CATACCTCAGCTCATCAAACTTGCTTGCACAAATACCTATAAACTGCAGTTCATGGTTAC TGCTAATAGTGGGTTCATTTCCTTGAGTGCTTTCTTCTTGCTCATCCTCTCTTACATCTT CATTCTGGCCACTCTTCAGAAACACTCCTCAGGAGGCTCATCCAAGGCTGTCTCTACTCT GTCAGCTCATATTACTGTTGTGGTTTTATTCTTTGGTCCACTGATTTTTTTCTATGTATG GCCCTCTCCTCCAACACATCTGAATAAATTTCTAGCCATATTTGATGCCATTTTCACTCC TTTTCTGAATCCAGTCATCTACACATTCAGGAACAGGGAAATGAAGATTGCAATAAGGAG AGTGTTCGGTCAATTTATGGGTTTTAGAAAAACTACT |
| Conceptual translation |
MNRDNQSVVSEFVLLGLSNSWETQDFSFLLF\LFYVSGVMANLIVVVTVTSDPYLHSSL YILLANLSVIDLTFCSIAARKMICDIFRKQKVISFWGCVAQIFFSHAVGGTEMVLLIAMA FDRYVAVCKPLHYLTIMHPRMCILILVASWAIGLIHSLVQLSFVVNLPFCGPNVLDSFYC DIPQLIKLACTNTYKLQFMVTANSGFISLSAFFLLILSYIFILATLQKHSSGGSSKAVST LSAHITVVVLFFGPLIFFYVWPSPPTHLNKFLAIFDAIFTPFLNPVIYTFRNREMKIAIR RVFGQFMGFRKTT Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 15 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 15 | 101,848,788 | 101,848,788 | SNP | C/T | 1000GP (CEU) | |
| 15 | 101,849,220 | 101,849,220 | SNP | C/G | 1000GP (CHBJPT) | |
| 15 | 102,388,991 | 102,388,991 | SNP | C/T | rs34449200 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 15 | 101,991,277 | 102,393,237 | CopyNumber | Variation_34506 (DGV) |
| 15 | 102,036,377 | 102,393,237 | CopyNumber | Variation_8808 (DGV) |
| 15 | 102,271,630 | 102,431,074 | CopyNumber | Variation_3985 (DGV) |
| 15 | 102,277,237 | 102,431,074 | CopyNumber | Variation_2202 (DGV) |
| 15 | 102,305,129 | 102,393,477 | CopyNumber | Variation_8809 (DGV) |
| 15 | 102,359,357 | 102,401,216 | CopyNumber | Variation_66908 (DGV) |
| 15 | 102,359,361 | 102,399,861 | CopyNumber | Variation_30726 (DGV) |
| 15 | 102,381,360 | 102,398,060 | CopyNumber | Variation_49464 (DGV) |
| 15 | 102,388,748 | 102,391,784 | CopyNumber | #94 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4F13P.aApr07 | exon_5UTR | chr15 | 101,842,119 | 101,842,148 | + | |
| exon_5UTR | chr15 | 101,842,922 | 101,843,004 | + | ||
| exon_5UTR | chr15 | 101,843,476 | 101,843,573 | + | ||
| exon_5UTR | chr15 | 101,848,389 | 101,848,527 | + | ||
| main_exon | 5UTR | chr15 | 101,848,621 | 101,848,645 | + | |
| CDS | chr15 | 101,848,645 | 101,849,581 | + | ||
| 3UTR | chr15 | 101,849,581 | 101,850,323 | + | ||