OR51L1 Olfactory Receptor
| Gene Symbol | OR51L11 (View this gene in GeneCards) |
| Family | 51 |
| Subfamily | L |
| Pseudogene | No |
| CORP pseudogene probability score | 0 (functional) |
| Aliases | OR11-31, HsOR11.3.40, ORL3370 |
| External Ids | HGNC: 14759 GeneBank: AB065799, BK004317, NM_001004755 ORDB: ORL3370 |
| Build #39 labels | OR51L1 |
| Chromosomal location | 11:4,998,983-4,999,927 (+) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR51F5P | 55.48% | 310 |
| OR51G1 | 55.92% | 304 |
| OR51G2 | 59.34% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR51H1 | 58% | 310 |
| Mouse | Or51l1-ps | 88% | 309 |
| Rat | Or51l1 | 88% | 315 |
| Cow | OR51L1B | 85% | 301 |
| Orang | OR51G2 | 60% | 296 |
| Horse | OR51F5 | 57% | 312 |
| Chimp | OR51H2 | 56% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB463974 |
| GNF Atlas2 | gnf1h10688_at |
Sequence information
| Nucleotide sequence |
ATGGGAGACTGGAATAACAGTGATGCTGTGGAGCCCATATTTATCCTGAGGGGTTTTCCT GGACTGGAGTATGTTCATTCTTGGCTCTCCATCCTCTTCTGTCTTGCATATTTGGTAGCA TTTATGGGTAATGTTACCATCCTGTCTGTCATTTGGATAGAATCCTCTCTCCATCAGCCC ATGTATTACTTTATTTCCATCTTAGCAGTGAATGACCTGGGGATGTCCCTGTCTACACTT CCCACCATGCTTGCTGTGTTATGGTTGGATGCTCCAGAGATCCAGGCAAGTGCTTGCTAT GCTCAGCTGTTCTTCATCCACACATTCACATTCCTGGAGTCCTCAGTGTTGCTGGCCATG GCCTTTGACCGTTTTGTTGCTATCTGCCATCCACTGCACTACCCCACCATCCTCACCAAC AGTGTAATTGGCAAAATTGGTTTGGCCTGTTTGCTACGAAGCTTGGGAGTTGTACTTCCC ACACCTTTGCTACTGAGACACTATCACTACTGCCATGGCAATGCCCTCTCTCACGCCTTC TGTTTGCACCAGGATGTTCTAAGATTATCCTGTACAGATGCCAGGACCAACAGTATTTAT GGGCTTTGTGTAGTCATTGCCACACTAGGTGTGGATTCAATCTTCATACTTCTTTCTTAT GTTCTGATTCTTAATACTGTGCTGGATATTGCATCTCGTGAAGAGCAGCTAAAGGCACTC AACACATGTGTATCCCATATCTGTGTGGTGCTTATCTTCTTTGTGCCAGTTATTGGGGTG TCAATGGTCCATCGCTTTGGGAAGCATCTGTCTCCCATAGTCCACATCCTCATGGCAGAC ATCTACCTTCTTCTTCCCCCAGTCCTTAACCCTATTGTCTATAGTGTCAGAACAAAGCAG ATTCGTCTAGGAATTCTCCACAAGTTTGTCCTAAGGAGGAGGTTT |
| Conceptual translation |
MGDWNNSDAVEPIFILRGFPGLEYVHSWLSILFCLAYLVAFMGNVTILSVIWIESSLHQP MYYFISILAVNDLGMSLSTLPTMLAVLWLDAPEIQASACYAQLFFIHTFTFLESSVLLAM AFDRFVAICHPLHYPTILTNSVIGKIGLACLLRSLGVVLPTPLLLRHYHYCHGNALSHAF CLHQDVLRLSCTDARTNSIYGLCVVIATLGVDSIFILLSYVLILNTVLDIASREEQLKAL NTCVSHICVVLIFFVPVIGVSMVHRFGKHLSPIVHILMADIYLLLPPVLNPIVYSVRTKQ IRLGILHKFVLRRRF Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,020,231 | 5,020,231 | NS | A/C | S/R | rs61910724 (DbSNP) |
| 11 | 5,020,933 | 5,020,933 | NS | A/T | N/Y | rs61729748 (DbSNP) |
| 11 | 5,021,055 | 5,021,055 | NS | C/G | I/M | rs61734126 (DbSNP) |
| 11 | 5,020,832 | 5,020,832 | NS | C/T | A/V | rs10768450 (DbSNP) |
| 11 | 5,020,861 | 5,020,861 | NS | C/T | L/F | rs61744618 (DbSNP) |
| 11 | 5,020,799 | 5,020,799 | NS | C/T | T/I | rs10768448 (DbSNP) |
| 11 | 5,020,416 | 5,020,416 | SYN | A/G | L/L | rs2445290 (DbSNP) |
| 11 | 5,020,509 | 5,020,509 | SYN | C/T | C/C | rs11035066 (DbSNP) |
| 11 | 4,999,279 | 4,999,279 | SYN | C/T | C/C | 1000GP (CEU, CHBJPT) |
| 11 | 4,999,569 | 4,999,569 | NS | C/T | T/I | 1000GP (CEU, CHBJPT) |
| 11 | 4,999,186 | 4,999,186 | SYN | A/G | L/L | 1000GP (CEU, CHBJPT) |
| 11 | 4,999,825 | 4,999,825 | NS | C/G | I/M | 1000GP (CEU, CHBJPT) |
| 11 | 4,999,602 | 4,999,602 | NS | C/T | A/V | 1000GP (CEU) |
| 11 | 100 | -100 | SYN | A/G | L/L | 1000GP (YRI, YRI, YRI) |
| 11 | 100 | -100 | NS | G/T | A/S | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,907,893 | 5,135,331 | CopyNumber | Variation_3835 (DGV) |
| 11 | 5,021,136 | 5,028,584 | CopyNumber | Variation_6920 (DGV) |
| 11 | 5,020,113 | 5,023,157 | CopyNumber | #57 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| V10A | A179S | T196I | A207V | L222V | N241Y | H246Y | I281M | R302P | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | V | A | T | A | L | N | H | I | R | 64.75 | 0.005 |
| 2 | V | A | I | V | L | N | H | I | R | 22.27 | 0.005 |
| 3 | V | A | T | A | L | N | H | M | R | 9.06 | 0.005 |
| 4 | V | A | T | A | L | Y | H | I | R | 1.54 | 0.008 |
| 5 | V | A | I | A | V | N | H | I | R | 1.38 | 0.005 |
| 6 | A | A | T | A | L | N | H | M | R | 0.31 | 0.005 |
| 7 | V | S | I | V | L | N | H | I | R | 0.23 | 0.005 |
| 8 | V | A | I | V | L | N | H | I | P | 0.15 | 0.005 |
| 9 | V | A | I | A | L | N | H | I | R | 0.08 | 0.005 |
| 10 | A | A | I | V | L | N | H | M | R | 0.08 | 0.005 |
| 11 | V | A | T | A | L | N | H | I | P | 0.08 | 0.005 |
| 12 | V | A | T | A | L | N | Y | I | R | 0.08 | 0.067 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR51L1.aApr07-unspliced | main_exon | CDS | chr11 | 4,998,983 | 4,999,927 | + |
| 3UTR | chr11 | 4,999,927 | 4,999,930 | + | ||