Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR52J3 Olfactory Receptor

Gene Symbol OR52J31 (View this gene in GeneCards)
Family 52
Subfamily J
Pseudogene No
CORP pseudogene probability score
Aliases OR11-32, HsOR11.3.43, ORL3287
External Ids HGNC: 14799   GeneBank: AB065530, BK004318, NM_001001916   ORDB: ORL3287   
Build #39 labels OR52J3
Chromosomal location 11:5,046,526-5,047,458 (+)
Cluster 11@5
Synteny CLIC#23
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR52J2P 84.62% 312

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR52J3 90% 312
Dog OR52J3C 89% 312
Chimp CONTIG465.110-5414 99% 311
Mouse Or52j3 82% 309
Rat Or52j3 82% 307
Rat Or52j3b 82% 307
Cow OR52J3 88% 311
Cow OR52J3DP 87% 311

Expression evidences

Source Accession
GNF Atlas2 gnf1h10943_at

Sequence information

Nucleotide sequence ATGTTTTATCACAACAAGAGCATATTTCACCCAGTCACATTTTTCCTCATTGGAATCCCA
GGTCTGGAAGACTTCCACATGTGGATCTCCGGGCCTTTCTGCTCTGTTTACCTTGTGGCT
TTGCTGGGCAATGCCACCATTCTGCTAGTCATCAAGGTAGAACAGACTCTCCGGGAGCCC
ATGTTCTACTTCCTGGCCATTCTTTCCACTATTGATTTGGCCCTTTCTACAACCTCTGTG
CCTCGCATGCTGGGTATCTTCTGGTTTGATGCTCACGAGATTAACTATGGAGCTTGTGTG
GCCCAGATGTTTCTGATCCATGCCTTCACTGGCATGGAGGCTGAGGTCTTACTGGCTATG
GCTTTTGACCGTTATGTGGCCGTCTGTGCTCCACTACATTACGCAACCATCTTGACATCC
CAAGTGTTGGTGGGCATTAGCATGTGCATTGTAATTCGTCCCGTTTTACTTACACTTCCC
ATGGTCTATCTTATCTACCGCCTACCCTTTTGTCAGGCTCACATAATAGCCCATTCCTAC
TGTGAGCACATGGGCATTGCAAAATTGTCCTGTGGAAACATTCGTATCAATGGTATCTAT
GGGCTTTTTGTAGTTTCTTTCTTTGTTCTGAACCTGGTGCTCATTGGCATCTCGTATGTT
TACATTCTCCGTGCTGTCTTCCGCCTCCCATCACATGATGCTCAGCTAAAAGCCCTAAGC
ACGTGTGGCGCTCATGTTGGAGTCATCTGTGTTTTCTATATCCCTTCAGTCTTCTCTTTC
CTTACTCATCGATTTGGACACCAAATACCAGGTTACATTCACATTCTTGTTGCCAATCTC
TATTTGATTATCCCACCCTCTCTCAACCCCATCATTTATGGGGTGAGGACCAAACAGATT
CGAGAACGAGTGCTCTATGTTTTTACTAAAAAA
Conceptual translation MFYHNKSIFHPVTFFLIGIPGLEDFHMWISGPFCSVYLVALLGNATILLVIKVEQTLREP
MFYFLAILSTIDLALSTTSVPRMLGIFWFDAHEINYGACVAQMFLIHAFTGMEAEVLLAM
AFDRYVAVCAPLHYATILTSQVLVGISMCIVIRPVLLTLPMVYLIYRLPFCQAHIIAHSY
CEHMGIAKLSCGNIRINGIYGLFVVSFFVLNLVLIGISYVYILRAVFRLPSHDAQLKALS
TCGAHVGVICVFYIPSVFSFLTHRFGHQIPGYIHILVANLYLIIPPSLNPIIYGVRTKQI
RERVLYVFTKK

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 5,068,662 5,068,662 nonsense SNP C/T R/* rs57026471 (DbSNP)
11 5,068,388 5,068,388 NS A/C K/N rs61995688 (DbSNP)
11 5,067,984 5,067,984 NS A/G T/A rs2500016 (DbSNP)
11 5,068,665 5,068,665 NS A/G M/V rs61747651 (DbSNP)
11 5,068,137 5,068,137 NS A/G I/V rs2500017 (DbSNP)
11 5,068,431 5,068,431 NS A/G I/V rs17350764 (DbSNP)
11 5,068,297 5,068,297 NS A/G Y/C rs58664826 (DbSNP)
11 5,068,177 5,068,177 NS A/T Q/L rs2500018 (DbSNP)
11 5,068,477 5,068,477 NS C/T T/M rs61731854 (DbSNP)
11 5,068,661 5,068,661 SYN A/G E/E rs2500019 (DbSNP)
11 5,047,432 5,047,432 nonsense SNP C/T R/* 1000GP (CEU, CHBJPT)
11 5,046,754 5,046,754 NS A/G T/A 1000GP (CEU, CHBJPT)
11 5,047,431 5,047,431 SYN A/G E/E 1000GP (CEU, CHBJPT)
11 5,046,907 5,046,907 NS G/A V/I 1000GP (CEU, CHBJPT)
11 5,047,201 5,047,201 NS G/A V/I 1000GP (CEU, CHBJPT)
11 5,046,947 5,046,947 NS A/T Q/L 1000GP (CEU, CHBJPT)
11 5,047,067 5,047,067 NS G/A C/Y 1000GP (CEU, CHBJPT)
11 100 -100 NS A/G T/A 1000GP (YRI, YRI, YRI, YRI, YRI)
11 100 -100 SYN A/G E/E 1000GP (YRI)
11 100 -100 nonsense SNP C/T R/* 1000GP (YRI)

Variations - CNVs

Chr Start End Type Sources
11 4,907,893 5,135,331 CopyNumber Variation_3835 (DGV)
11 5,066,087 5,073,101 CopyNumber Variation_48810 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

T77A V128I Q141L C181Y N211K V226I R303* % Freq CORP
1 T V Q C N V R 53.38 0.146
2 A I L C N V R 26.04 0.017
3 A I L Y N I * 9.75 1.200
4 A I L C N I R 7.60 0.056
5 A I L C N I * 0.84 1.200
6 A I L Y N I R 0.69 0.200
7 A I L C K I * 0.54 1.200
8 T I L C N V R 0.38 0.017
9 A V Q C N V R 0.38 0.146
10 T V Q Y N V R 0.08 0.421
11 A I L Y K I * 0.08 1.200
12 T V L C N V R 0.08 0.146
13 A I Q C N V R 0.08 0.017
14 T V Q C N I R 0.08 0.366

AceView Gene Models

The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.

Accession Type Chr Start End Strand
OR52J3.aApr07-unspliced main_exon CDS chr11 5,046,526 5,047,458 +
3UTR chr11 5,047,458 5,047,461 +