Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR52P1P Olfactory Receptor

Gene Symbol OR52P1P1 (View this gene in GeneCards)
Family 52
Subfamily P
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-66, HsOR11.3.76P
External Ids HGNC: 15232   GeneBank: AB065534, BK004746, NG_004220   
Build #39 labels OR52P1
Chromosomal location 11:5,726,502-5,727,461 (+)
Cluster 11@6
Synteny CLIC#23
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR52L1 59.12% 296
OR52L2P 58.45% 296
OR52P2P 58.45% 296

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR52P1 88% 321
Chimp CONTIG*********** 98% 321
Mouse Or52p1 87% 321
Rat Or52p1 87% 321
Cow OR52P1 88% 309

Expression evidences

Source Accession
mRNA DQ656033

Sequence information

Nucleotide sequence ATGGAATCTCCTCATCACACTGATGTTGACCCTTCTTGTCTTCTTCCTCCTGGGCATCCC
AGGTCTGGAACAATTTCATTTGTGGCTCTCACTCCCTGTGTGTGGCTTAGGCACAGCCAC
AATTGTGGGCAATATAACTATTCTGGTTGTTGTTGCCACTGAACCAGTCTTGCACAAGCC
TGTGTACCTTTTTCTGTGCATGCTCTCAACCATCGACTTGGCTGCCTCTGTCTCCACAGT
TCCCAAGCTACTGGCTATCTTCTGGTGTGGAGCCGGACATATATCTGCCTCTGCCTGCCT
GGCACAGATGTTCTTCATTCATGCCTTCTGCATGATGGAGTCCACTGTGCTACTGGCCAT
GGCCTTTGATCGCTACGTGGCCATCTGCCACCCACTCCGCTATGCCACAATCCTCACTGA
CACCATCATTGCCCACATAGGGGTGGCAGCTGTAGTGCGAGGCTCCCTGCTCATGCTCCC
ATGTCCCTTCTTTATTGGGCGTTTGAACTTCTGCCAAAGCCATGTGATCCTACACACGTA
CTGTACATGGCTGTGGTGAAGCTGGCCTGTGGAGACACCAGGCCTAACCGTGTGTATGGG
CTGACAGCTGCACTGTTGGTCACTGGGGTTGACTTGTTTTGCATTGGTCTCTCCTATGCC
CTAATTGCACAAGCTGTCCTTCGCCTCTCATCCCATGAAGCTCGGTCCAAGGCCCTAGGG
ACCTGTGGTTCCCATGTCTGTGTCATCCTCATCTCTTATACACCAGCCCTCTTCTCCTTT
TTTACACACCGCTTTGGCCATCACGTTCCAGTCCATATTCACATTCTTTTGGCCAATGTT
TATCTGCTTTTGCCACCTGCTCTTAATCCTGTGGTATATGGAGTTAAGACCAAACAGATC
CGTAAAAGAGTTGTCAGGGTGTTTCAAAGTGGGCAGGAAATGGGCATCAAGGCATCTGAG
Conceptual translation MESPH\LMLTLLVFFLLGIPGLEQFHLWLSLPVCGLGTATIVGNITILVVVATEPVLHK
PVYLFLCMLSTIDLAASVSTVPKLLAIFWCGAGHISASACLAQMFFIHAFCMMESTVLLA
MAFDRYVAICHPLRYATILTDTIIAHIGVAAVVRGSLLMLPCPFFIGRLNFCQSHVILHT
YC/MAVVKLACGDTRPNRVYGLTAALLVTGVDLFCIGLSYALIAQAVLRLSSHEARSKA
LGTCGSHVCVILISYTPALFSFFTHRFGHHVPVHIHILLANVYLLLPPALNPVVYGVKTK
QIRKRVVRVFQSGQEMGIKASE

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 5,747,768 5,747,768 Del(1) -/T rs34463490 (DbSNP)
11 5,747,767 5,747,767 Del(1) -/T rs67111336 (DbSNP)
11 5,748,277 5,748,276 Ins(4) -/GAGC rs35948000 (DbSNP)
11 5,748,276 5,748,275 Ins(4) -/GAGC rs10627966 (DbSNP)
11 5,748,632 5,748,632 SNP A/C rs12223005 (DbSNP)
11 5,747,744 5,747,744 SNP A/C rs10838598 (DbSNP)
11 5,748,669 5,748,669 SNP A/G rs12224409 (DbSNP)
11 5,748,222 5,748,222 SNP C/T rs7933860 (DbSNP)
11 5,748,354 5,748,354 SNP C/T rs7944807 (DbSNP)
11 5,748,396 5,748,396 SNP G/T rs7934096 (DbSNP)
11 5,748,642 5,748,642 SNP G/T rs12224687 (DbSNP)
11 5,748,038 5,748,038 SNP G/T rs11038865 (DbSNP)
11 5,726,514 5,726,514 SNP C/A 1000GP (CEU, CHBJPT)
11 5,726,808 5,726,808 SNP G/T 1000GP (CEU, CHBJPT)
11 5,726,895 5,726,895 SNP A/T 1000GP (CEU, CHBJPT)
11 5,726,992 5,726,992 SNP T/C 1000GP (CEU, CHBJPT)
11 5,727,045 5,727,045 SNP T/C 1000GP (CEU)
11 5,727,047 5,727,047 SNP C/G 1000GP (CEU)
11 5,727,124 5,727,124 SNP C/T 1000GP (CEU, CHBJPT)
11 5,727,166 5,727,166 SNP T/G 1000GP (CEU, CHBJPT)
11 5,727,402 5,727,402 SNP C/A 1000GP (CEU, CHBJPT)
11 5,727,412 5,727,412 SNP T/G 1000GP (CEU, CHBJPT)
11 5,727,439 5,727,439 SNP A/G 1000GP (CEU, CHBJPT)
11 100 -100 SNP C/A 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
11 5,730,377 5,970,717 CopyNumber Variation_3836 (DGV)
11 5,505,764 6,194,475 CopyNumber Variation_34458 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.