OR5D3P Olfactory Receptor
Gene Symbol | OR5D3P1 (View this gene in GeneCards) |
Family | 5 |
Subfamily | D |
Pseudogene | Yes |
CORP pseudogene probability score | 0.07 (functional) |
Aliases | OR11-8b, OR11-8c, OR5D3, OR5D4, OR11-140, HsOR11.11.23P, ORL3530 |
External Ids | HGNC: 8336 GeneBank: AF065860, AF065861, AF399364, BK004331, NG_002172 ORDB: ORL3530 |
Build #39 labels | OR5D3P |
Chromosomal location | 11:55,726,199-55,727,155 (+) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks | Full ORF without a suitable ATG |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR5D2P | 85.67% | 314 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR5D3 | 87% | 290 |
Mouse | Or5d3-ps | 82% | 310 |
Rat | Or5d45-ps | 76% | 308 |
Cow | OR5D95P | 79% | 312 |
Orang | OR8D4 | 51% | 306 |
Horse | OR5D2 | 83% | 316 |
Horse | OR5D3BP | 80% | 311 |
Horse | OR5D3CP | 80% | 311 |
Chimp | OR5D3 | 97% | 290 |
Sequence information
Nucleotide sequence |
TTATTTTTTTCTCACAGGATTCAAAAAAATCAGACTGCTGGAGTCACCTTCATCCTCTTG GGCTTCTCAGAATTTCCAGACCTTCAGATACCCCTGTTCCTGGTCTTCCTGACCATCTAC ACAATCACTGTGATGGGGAATCTGGGCATGATCATGGTCATCAGGATCAACCCCAAACTC CACACCCCTATGTACTTTTTCCTCAGCCACTTGTCCTTTGTTGATTTCTGTTATTCCACC ACAATTACACCAAAACTGCTGGAGAACTTGGTTGTGGAAGACAGAATCATCTCCTTCACA GGATGCATCATGCAATTCTTCTTTGCCTGTATATTTGTGGTGACAGAAACATTCATGCTG GCAGCGATGGCTTATGACAGATTTGTGGCAGTGTGTAACCCTCTGCTTTACACAGTTGCA ATGTCCCAGAGGCTTTGCTCCTTGTTAGTGGCTGCATCATACTCTTGGAGTTTAGTTTGT TCCTTAACATACACATATTTTCTGTTGACTTTATCTTTTTGTAGGACTAACTTCATTAAT AACTTTGTCTGTGAGCACGCTGCCATTGTTGCTGTGTCCTGCTCTGACCCCTACATGAGC CAGAAGGTCATTTTAGTTTCTGCAACATTCAATGAAATAAGCAGCCTGGTGATCATTCTC ACTTCCTATGCTTTCATTTTTATCACTGTCATGAAGATGCCTTCCACTGGGGGGCGCAAG AAAGCGTTCTCCACGTGTGCCTCCCACCTGACCGCCATTACCATTTTCCATGGGACTATC CTTTTTCTCTACTGTGTTCCTAACTCCAAAAGTTCATGGCTCATGGTCAAGGTGGCCTCT GTCTTTTACACAGTGGTCATTCCCATGCTGAACCCCTTGATCTATAGCCTCAGGAACAAA GATGTAAAAGAGACAGTCAGGAAGTTAGTCATTACCAAATTATTATGTCATAAAATG |
Conceptual translation |
LFFSHRIQKNQTAGVTFILLGFSEFPDLQIPLFLVFLTIYTITVMGNLGMIMVIRINPKL HTPMYFFLSHLSFVDFCYSTTITPKLLENLVVEDRIISFTGCIMQFFFACIFVVTETFML AAMAYDRFVAVCNPLLYTVAMSQRLCSLLVAASYSWSLVCSLTYTYFLLTLSFCRTNFIN NFVCEHAAIVAVSCSDPYMSQKVILVSATFNEISSLVIILTSYAFIFITVMKMPSTGGRK KAFSTCASHLTAITIFHGTILFLYCVPNSKSSWLMVKVASVFYTVVIPMLNPLIYSLRNK DVKETVRKLVITKLLCHKM Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 55,494,114 | 55,494,113 | Ins(1) | -/C | rs36019018 (DbSNP) | |
11 | 55,493,764 | 55,493,764 | SNP | A/G | rs10897175 (DbSNP) | |
11 | 55,493,839 | 55,493,839 | SNP | A/G | rs12285202 (DbSNP) | |
11 | 55,493,748 | 55,493,748 | SNP | A/T | rs11230788 (DbSNP) | |
11 | 55,494,320 | 55,494,320 | SNP | C/G | rs2612706 (DbSNP) | |
11 | 55,494,403 | 55,494,403 | SNP | C/T | rs34232406 (DbSNP) | |
11 | 55,493,961 | 55,493,961 | SNP | C/T | rs11230791 (DbSNP) | |
11 | 55,494,194 | 55,494,194 | SNP | C/T | rs12098871 (DbSNP) | |
11 | 55,493,965 | 55,493,965 | SNP | C/T | rs12291767 (DbSNP) | |
11 | 55,493,863 | 55,493,863 | SNP | C/T | rs11230789 (DbSNP) | |
11 | 55,494,172 | 55,494,172 | SNP | T/C | rs1023921 (DbSNP) | |
11 | 55,726,272 | 55,726,272 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
11 | 55,726,288 | 55,726,288 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
11 | 55,726,387 | 55,726,387 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
11 | 55,726,485 | 55,726,485 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
11 | 55,726,696 | 55,726,696 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
11 | 55,726,718 | 55,726,718 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
11 | 55,726,927 | 55,726,927 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
11 | 100 | -100 | SNP | T/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
11 | 55,475,356 | 55,563,900 | CopyNumber | Variation_1244 (DGV) |
11 | 55,446,295 | 55,618,623 | CopyNumber | Variation_2167 (DGV) |
11 | 55,339,702 | 55,638,112 | CopyNumber | Variation_2926 (DGV) |
11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
11 | 55,382,681 | 55,548,038 | CopyNumber | Variation_4743 (DGV) |
11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
11 | 55,445,294 | 55,620,699 | CopyNumber | Variation_9187 (DGV) |
11 | 55,377,006 | 55,620,699 | CopyNumber | Variation_9188 (DGV) |
11 | 55,422,586 | 55,596,313 | CopyNumber | Variation_10360 (DGV) |
11 | 55,422,585 | 55,596,313 | CopyNumber | Variation_29911 (DGV) |
11 | 55,432,955 | 55,495,323 | Inversion | Variation_37124 (DGV) |
11 | 55,460,683 | 55,547,092 | CopyNumber | Variation_38236 (DGV) |
11 | 55,463,782 | 55,584,109 | CopyNumber | Variation_48056 (DGV) |
11 | 55,437,126 | 55,596,313 | CopyNumber | Variation_48840 (DGV) |
11 | 55,442,368 | 55,596,313 | CopyNumber | Variation_48841 (DGV) |
11 | 55,444,868 | 55,591,047 | CopyNumber | Variation_48842 (DGV) |
11 | 55,444,868 | 55,596,313 | CopyNumber | Variation_48843 (DGV) |
11 | 55,447,427 | 55,596,313 | CopyNumber | Variation_53429 (DGV) |
11 | 55,422,345 | 55,603,590 | CopyNumber | Variation_65956 (DGV) |
11 | 55,422,701 | 55,509,962 | CopyNumber | Variation_85778 (DGV) |
CopyNumber | 46 (Hasin) | |||
11 | 55,493,575 | 55,496,631 | Deletion | #275 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.