OR5G5P Olfactory Receptor
| Gene Symbol | OR5G5P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | G |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-214, HsOR11.11.93P, ORL3648 |
| External Ids | HGNC: 15289 GeneBank: BK004648, NG_004191 ORDB: ORL3648 |
| Build #39 labels | OR5G5P |
| Chromosomal location | 11:56,801,859-56,802,794 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5G3P | 70.7% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5G5 | 80% | 314 |
| Mouse | Or5g25 | 74% | 308 |
| Rat | Or5g25 | 75% | 308 |
| Cow | OR5G34 | 69% | 314 |
| Orang | OR5G3 | 71% | 314 |
| Horse | OR5G35 | 79% | 314 |
| Chimp | OR5G3 | 71% | 314 |
Sequence information
| Nucleotide sequence |
ATGGACTATAGAAATCAAACTTTGGTTACTGAATTTTTTTCCGTGGGATTAACAAATCTC TTTCAGCACAAGATTGCTCTCTTTCTGGTATTTCTCTTTGTTTATCTTGTCACTGTTCCG GGAAACTTGGGAATGATCACTCTTATTTGGATGGATTCTCGACTCCAGACCCCCATGTAC TTTTCTCTCTGCCACTTGTCCTTTGTGGATGTCTGCTCCTCTTCTGCCATCGGTCCCAAG ATGTTGACTGATATCTTCGTGGAGAAAAAAGTAATCTCTTTGGTTGTGTTGCCCAGTTAT GGTTTTTTGGCCATTTTGTAGTAACTGAATGTTTCCTTCTGGCTGCCATGGCATATGACC GGTATAGGCTATCTATAAGCCTTTGTTGTATACACTCATTATGTCCCAACAGGTCTGTGT GCAGCTGGTGGTGGGCCTTATGCTGTGGGCCTTATAAGCACCATGACCCATATGACTTTC ACCTTTCGCCTACTCTACTGTGGTCCAAACATCATCAATCACTTCTTCTGTGACCTTCTC CCTGTCCTCTCCCTGGCATATGCAGATACCCATATTAATAAATGTTTACTTTTTATCTTG GTGGGTGCCCTGGGAGTACTCAGTGGTGTGATCATCTTGGTCTCCTACATTTACATTGTC ATTGCCATCCTGAGAATTCGCTCTGCTGACGCGAGACGCAAAGACTTCTCCACTTGCTCT TCACACCTGATGGCTGTCTCCATCCTGTATGGGACACTCTTCTTTATCTGTGTATGTCCA AGCTCTAGTTTCTCTATCAACATCAATAAAGTGGTTTCCCTGTTCTACACAGCAGTGATC CCCATGTTGAATCCCCTTATCTACAGCCTGAGAAACAAGGAGGTAAAAGATTCATTCAGC AAGAAGTTTGAAAGAAAGAAGTTTCTTATAGGTAGG |
| Conceptual translation |
MDYRNQTLVTEFFSVGLTNLFQHKIALFLVFLFVYLVTVPGNLGMITLIWMDSRLQTPMY FSLCHLSFVDVCSSSAIGPKMLTDIFVEKKVI/FGCVAQLWFFGHFVVTECFLLAAMAY DRY/AIYKPLLYTLIMSQQVCVQLV/GPYAVGLISTMTHMTFTFRLLYCGPNIINHFF CDLLPVLSLAYADTHINKCLLFILVGALGVLSGVIILVSYIYIVIAILRIRSADARRKDF STCSSHLMAVSILYGTLFFICVCPSSSFSININKVVSLFYTAVIPMLNPLIYSLRNKEVK DSFSKKFERKKFLIGR Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,569,422 | 56,569,422 | SNP | A/C | rs12362785 (DbSNP) | |
| 11 | 56,570,067 | 56,570,067 | SNP | A/G | rs7121576 (DbSNP) | |
| 11 | 56,569,912 | 56,569,912 | SNP | A/G | rs61054235 (DbSNP) | |
| 11 | 56,570,035 | 56,570,035 | SNP | A/G | rs58456747 (DbSNP) | |
| 11 | 56,569,547 | 56,569,547 | SNP | A/G | rs17151207 (DbSNP) | |
| 11 | 56,570,095 | 56,570,095 | SNP | A/T | rs483365 (DbSNP) | |
| 11 | 56,569,429 | 56,569,429 | SNP | C/G | rs56349734 (DbSNP) | |
| 11 | 56,569,645 | 56,569,645 | SNP | C/T | rs4939088 (DbSNP) | |
| 11 | 56,569,574 | 56,569,574 | SNP | G/A | rs61732339 (DbSNP) | |
| 11 | 56,570,229 | 56,570,229 | SNP | G/A | rs550500 (DbSNP) | |
| 11 | 56,570,012 | 56,570,012 | SNP | T/C | rs552409 (DbSNP) | |
| 11 | 56,801,946 | 56,801,946 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,801,953 | 56,801,953 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 56,802,071 | 56,802,071 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,802,161 | 56,802,161 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 56,802,169 | 56,802,169 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 56,802,536 | 56,802,536 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 56,802,591 | 56,802,591 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 56,802,619 | 56,802,619 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 11 | 56,802,753 | 56,802,753 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,801,950 | 56,801,950 | SNP | A/C | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | C/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR5G3PandOR5G5P.aApr07 | main_exon | chr11 | 56,802,084 | 56,802,382 | - | |
| main_exon | CDS_partial | chr11 | 56,802,084 | 56,802,382 | - | |
| CDS_partial | chr11 | 56,802,525 | 56,802,794 | - | ||
| 5UTR | chr11 | 56,802,794 | 56,802,808 | - | ||
| exon_5UTR | chr11 | 56,819,581 | 56,819,708 | - | ||
| OR5G3PandOR5G5P.bApr07 | main_exon | chr11 | 56,802,076 | 56,802,194 | - | |
| main_exon | chr11 | 56,802,525 | 56,802,554 | - | ||
| main_exon | CDS_partial | chr11 | 56,802,076 | 56,802,194 | - | |
| CDS_partial | chr11 | 56,802,525 | 56,802,554 | - | ||
| CDS_partial | chr11 | 56,802,708 | 56,802,794 | - | ||
| 5UTR | chr11 | 56,802,794 | 56,802,808 | - | ||
| exon_5UTR | chr11 | 56,819,581 | 56,819,647 | - | ||