OR7E62P Olfactory Receptor
| Gene Symbol | OR7E62P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR2-4, OR2-75, OR2-52, OR2-53, PJCG9, HsOR2.1.3P, ORL3086 |
| External Ids | HGNC: 8438 GeneBank: AF359419, AF399423, NG_002317, U86257-U86260 ORDB: ORL3086 |
| Build #39 labels | OR7E62P |
| Chromosomal location | 2:71,055,138-71,056,158 (+) |
| Cluster | 2@71 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E102P | 88.22% | 331 |
| OR7E108P | 86.22% | 341 |
| OR7E116P | 85.92% | 341 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E24 | 68% | 328 |
| Mouse | Or7e178 | 65% | 308 |
| Rat | Or7e173 | 62% | 308 |
| Cow | OR7E186 | 65% | 327 |
| Orang | OR7E100P | 85% | 315 |
| Orang | OR7E111P | 85% | 297 |
| Orang | OR7E102 | 87% | 290 |
| Horse | OR7E225 | 66% | 322 |
| Chimp | OR7E102P | 83% | 320 |
| Chimp | OR7E115P | 82% | 318 |
| Chimp | OR7E111P | 86% | 297 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | CK904348 |
| mRNA | AF359418 |
Sequence information
| Nucleotide sequence |
GTTTTTATCTTTTATTTTTCCAATCCTCTTTTCTTCTCAAGGTGTCCAAGTCACACAGAG CCACGGAATCTCACAGGTGTCTCAGAATTCCTCCTCCTGGGACTCTCAGAGGATCCAGAA CTGCAGCCTGTCCTCCCTGGGCTGTCCCTGTCCATGTATCTGCTCACGGTGCTGAGGAAC CTGCTCATCATCCTGGCTGTCAGCTCTGACTCCCACCTCCACACCCCCATGTACTTCTTC CTCTCCAACCCGTCATGGGCTGACATCGCTTTCACCTCGGCCACAGTTCCCAAGATGATT GTGGACATGCAGTCGCATAGCAGTCATCTCTTATGCAAGCTGCCTGACACAGATGTCTTT CTTTGCCCTTTTTGCATGCATAGAAGATCATGCTCCTGATTGTGATGGCCTATGACCGAT TTGTAGCCGTCTGTCACTCCCCACACTACCCAGTCATCATGAATCCTCGCCTCGGTGTCT TCTTCGTTTTGGTGTCCTTTTTCCTTAGCCTGTTGGATTCCCAGCTGCACAGTTGGACTG TGTTACAATTCACCTTCTTCAAGAATGTGGAAATCTCTAATTTTGTCTGTGACCCATCTC AACTTCTCAACCTTGCCTGTTCTGACAGCGTCATCGATAGCATATTCATATATTTAGATA GTACTATGTTTCGTTTTCTTCCGATTTCAGGGATCCTTTTGTCTTACTCTAACATTGTCC CCTCCATTCTAAGAATTTCATCATCAGATGGGAAGTCTAAAGCCTTCTCCACCTGTCGCT CTCACCTGGCAGTTGTTTGCTTATTTTATGGAACAGGCATTGGCGTGTACCTGACTTCAG CTGTGGCACCACCCCCAGGAGTGGTGTGGTGGTGTCAGTGATGTACACTGTGGTCACCCC CATGCTGAACCCTTTCATCTACTGCCTGAGAAACAGGGACATTCAAAGCGCCCTGTGGAG GCTGCGCAGCAGAACAGTCGAATCTCATGATCTGTTCCATCCTTTTTCTTGTGTGGGTAA G |
| Conceptual translation |
VFIFYFSNPLFFSRCPSHTEPRNLTGVSEFLLLGLSEDPELQPVLPGLSLSMYLLTVLRN LLIILAVSSDSHLHTPMYFFLSNPSWADIAFTSATVPKMIVDMQSH\VISYASCLTQMS FFALFACIED\LLIVMAYDRFVAVCHSPHYPVIMNPRLGVFFVLVSFFLSLLDSQLHSW TVLQFTFFKNVEISNFVCDPSQLLNLACSDSVIDSIFIYLDSTMFRFLPISGILLSYSNI VPSILRISSSDGKSKAFSTCRSHLAVVCLFYGTGIGVYLTSAVAPPPG/GVVVSVMYTV VTPMLNPFIYCLRNRDIQSALWRLRSRTVESHDLFHPFSCVGK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 2 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 2 | 71,055,392 | 71,055,392 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 2 | 71,055,420 | 71,055,420 | SNP | A/G | 1000GP (CHBJPT) | |
| 2 | 71,055,452 | 71,055,452 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 2 | 71,055,474 | 71,055,474 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 2 | 71,055,503 | 71,055,503 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 2 | 71,055,566 | 71,055,566 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 2 | 71,055,787 | 71,055,787 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 2 | 71,055,810 | 71,055,810 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 2 | 71,055,887 | 71,055,887 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 2 | 71,282,522 | 71,282,522 | SNP | A/G | rs12993301 (DbSNP) | |
| 2 | 71,282,550 | 71,282,550 | SNP | A/G | rs60528487 (DbSNP) | |
| 2 | 71,282,633 | 71,282,633 | SNP | C/T | rs4852757 (DbSNP) | |
| 2 | 71,282,696 | 71,282,696 | SNP | G/A | rs1833352 (DbSNP) | |
| 2 | 71,282,940 | 71,282,940 | SNP | A/G | rs11885237 (DbSNP) | |
| 2 | 71,283,017 | 71,283,017 | SNP | G/T | rs72485376 (DbSNP) | |
| 2 | 71,283,123 | 71,283,122 | Ins(1) | -/T | rs35074164 (DbSNP) | |
| 2 | 71,283,128 | 71,283,128 | SNP | A/G | rs34797997 (DbSNP) | |
| 2 | 71,283,247 | 71,283,247 | SNP | A/G | rs11886491 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR7E62P.aApr07-unspliced | main_exon | CDS_partial | chr2 | 71,055,542 | 71,056,158 | + |
| 3UTR | chr2 | 71,056,158 | 71,056,192 | + | ||